Command line: [exonerate -m p2g --showtargetgff -q ./SPP00000333_2.0.fa -t ./SPP00000333_2.0/fastasubseq/KV389435.1_fastasubseq.fa]
Hostname: [ws101072u]
C4 Alignment:
------------
Query: SPP00000333_2.0 # Protein # SECIS binding protein 2 (SBP2) # Marmoset
Target: KV389435.1:subseq(7246006,100668) Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold9, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 5384
Query range: 0 -> 1083
Target range: 5060 -> 50668
1 : LysAsnValLysLeuSerAlaGluValGluProPheIleProGlnLysLysSerProAsp : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LysAsnValLysLeuSerAlaGluValGluProPheIleProGlnLysLysSerProAsp
5061 : AAGAATGTCAAGCTGTCGGCTGAGGTAGAGCCATTTATTCCCCAGAAGAAGAGTCCTGAT : 5118
21 : ThrPheMetIleProMetAlaLeuProAsnAspAsnGlySerValSerGlyValGluPro : 40
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ThrPheMetIleProMetAlaLeuProAsnAspAsnGlySerValSerGlyValGluPro
5119 : ACATTTATGATCCCTATGGCTCTCCCAAATGATAATGGAAGTGTTTCTGGTGTAGAACCA : 5178
41 : ThrProIleProSerTyrLeuIleThrCysTyrProPheValGlnGluAsnGlnSerAsn : 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ThrProIleProSerTyrLeuIleThrCysTyrProPheValGlnGluAsnGlnSerAsn
5179 : ACTCCAATTCCCAGCTACCTGATTACTTGTTACCCATTTGTGCAGGAAAACCAGTCCAAT : 5238
61 : {Ar} >>>> Target Intron 1 >>>> {g}GlnPheProLeuTyrAsnAsnAsp : 69
{||} 1783 bp {|}||||||||||||||||||||||||
{Ar}++ ++{g}GlnPheProLeuTyrAsnAsnAsp
5239 : {ag}gt.........................ag{A}CAGTTTCCTTTATATAACAATGAT : 7048
70 : IleArgTrpGlnGlnProAsnProAsnProThrGlyProTyrPheAlaTyrProIleIle : 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IleArgTrpGlnGlnProAsnProAsnProThrGlyProTyrPheAlaTyrProIleIle
7049 : ATACGATGGCAACAACCGAATCCAAACCCTACTGGACCATACTTTGCCTACCCCATTATA : 7108
90 : SerAlaGlnProProValSerThrGluTyrThrTyrTyrGlnLeuMetProAlaProCys : 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SerAlaGlnProProValSerThrGluTyrThrTyrTyrGlnLeuMetProAlaProCys
7109 : TCTGCTCAGCCACCGGTTTCTACAGAGTATACATATTATCAGCTGATGCCAGCACCATGT : 7168
110 : AlaGlnValMetGlyPheTyrHisProPheProAlaProTyrSerAsnThrPheGlnAla : 129
|||||||||||||||||||||||||||||||||.!!||||||||||||||||||||||||
AlaGlnValMetGlyPheTyrHisProPheProThrProTyrSerAsnThrPheGlnAla
7169 : GCTCAGGTTATGGGTTTCTATCATCCTTTTCCTACACCTTACTCAAACACCTTTCAGGCT : 7228
130 : AlaAsnThrValAsnAlaIleThrThrGluCysThrGluArgProSerGlnLeuGlyGln : 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaAsnThrValAsnAlaIleThrThrGluCysThrGluArgProSerGlnLeuGlyGln
7229 : GCAAATACTGTAAATGCTATTACCACAGAATGCACTGAGCGTCCAAGTCAGCTTGGACAG : 7288
150 : ValPheProLeuSerSerHisArgSerArgAsnSerAsnArgGlyThrValValProLys : 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ValPheProLeuSerSerHisArgSerArgAsnSerAsnArgGlyThrValValProLys
7289 : GTCTTCCCGTTGTCCAGCCATCGAAGCAGAAACAGTAACAGAGGAACAGTGGTACCAAAA : 7348
170 : >>>> Target Intron 2 >>>> GlnGlnLeuLeuGlnGlnHisIleLysSerL : 180
2287 bp |||||||||||||||||||||||||||||||
++ ++GlnGlnLeuLeuGlnGlnHisIleLysSerL
7349 : gt.........................agcaacAGCTTTTACAACAGCATATAAAAAGCA : 9668
181 : ysArgProMetValLysAsnValAlaThrGlnLysGluThrAsnAlaAlaGlyProAspS : 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ysArgProMetValLysAsnValAlaThrGlnLysGluThrAsnAlaAlaGlyProAspS
9669 : AAAGGCCCATGGTGAAAAATGTGGCTactcagaaagaaacaaatgcagCAGGTCCTGATA : 9728
201 : erArgSerLysIleValLeuLeuValAspAlaSerGlnGlnThr{A} >>>> Target : 215
||||||||||||||||||||||||||||||||||||||||||||{|} 50
erArgSerLysIleValLeuLeuValAspAlaSerGlnGlnThr{A}++
9729 : GTCGATCAAAAATTGTACTTCTGGTAGATGCTTCACAGCAAACT{G}gt........... : 9776
216 : Intron 3 >>>> {sp}PheProSerAspIleAlaAsnLysSerLeuSerGluThrT : 229
49 bp {||}||||||||||||||||||||||||||||||||||||||||
++{sp}PheProSerAspIleAlaAsnLysSerLeuSerGluThrT
9777 : ..............ag{AT}TTCCCATCAGATATCGCTAACAAGTCTCTCTCAGAGACCA : 14864
230 : hrAlaThrMetLeuTrpLysThrLysSerArgArgArgArgAlaSerHisProThrAlaG : 249
||||||||||||||||||||:!!||||||||||||||||||||||||||||||.!!||||
hrAlaThrMetLeuTrpLysSerLysSerArgArgArgArgAlaSerHisProAlaAlaG
14865 : CTGCCACAATGCTCTGGAAGTCCAAGAGCAGGAGAAGAAGAGCATCCCACCCTGCTGCTG : 14924
250 : luSerSerSerGluGlnGlyAlaSerGluAlaAspIleAspSerAspSerGlyTyrCysS : 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
luSerSerSerGluGlnGlyAlaSerGluAlaAspIleAspSerAspSerGlyTyrCysS
14925 : AATCTTCTAGTGAGCAGGGGGCTAGTGAAGCCGACATTGACAGTGACAGTGGTTACTGCA : 14984
270 : erProLysHisSerAsnAsnGlnProAlaAlaGlyAlaLeuArgAsnProAspSerGlyT : 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
erProLysHisSerAsnAsnGlnProAlaAlaGlyAlaLeuArgAsnProAspSerGlyT
14985 : GTCCCAAACACAGCAACAACCAGCCTGCAGCAGGGGCTTTGAGAAATCCTGATTCTGGGA : 15044
290 : hrMetAsnVal{C} >>>> Target Intron 4 >>>> {ys}GlyValAsnTrpS : 298
|||||||||||{|} 1284 bp {||}|||||||||||||
hrMetAsnVal{C}++ ++{ys}GlyValAsnTrpS
15045 : CCATGAATGTA{T}gt.........................ag{gt}GGTGTAAATTGGT : 16355
299 : erAsnValThrCysGlnAlaThrGlnLysLysProTrpMetGluLysAsnGlnThrPheS : 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
erAsnValThrCysGlnAlaThrGlnLysLysProTrpMetGluLysAsnGlnThrPheS
16356 : CCAATGTAACTTGCCAGGCAACTCAGAAAAAACCTTGGatggaaaaaaatcagacatttt : 16415
319 : erArgGlyGlyArgGlnThrGluGlnArgAsnAsnSerGln >>>> Target Intro : 332
||||||||||||||||||||||||||||||||||||||||| 7621 bp
erArgGlyGlyArgGlnThrGluGlnArgAsnAsnSerGln++
16416 : CTAGAGGTGGAAGGCAAACTGAACAAAGAAATAATTCACAGgt................. : 16459
333 : n 5 >>>> ValGlyPheArgCysArgGlyHisSerThrSerSerGluArgArgGlnAs : 348
||||||||||||||||||||||||||||||||||||||||||||||||||
++ValGlyPheArgCysArgGlyHisSerThrSerSerGluArgArgGlnAs
16460 : ........agGTTGGATTCAGATGCCGAGGACACAGTACTTCCTCAGAAAGAAGACAGAA : 24126
349 : nLeuGlnLysArgProAspAsnLysHisLeuAsnSerSerGlnSerHisArgSerAspPr : 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
nLeuGlnLysArgProAspAsnLysHisLeuAsnSerSerGlnSerHisArgSerAspPr
24127 : TTTGCAAAAGAGACCAGATAATAAGCATTTAAACTCTAGTCAATCCCATAGAAGCGATCC : 24186
369 : oAsnSerGluSerLeuTyrPheGlu >>>> Target Intron 6 >>>> AspGlu : 378
||||||||||||||||||||||||| 1974 bp ||||||
oAsnSerGluSerLeuTyrPheGlu++ ++AspGlu
24187 : AAATTCTGAGTCTttatattttgaggt.........................agGATGAA : 26190
379 : AspGlyPheGlnGluProAsnGluAsnGlyAsnAlaLysAspGluAsnIleGlnGlnLys : 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AspGlyPheGlnGluProAsnGluAsnGlyAsnAlaLysAspGluAsnIleGlnGlnLys
26191 : GATGGGTTTCAAGAACCAAATGAGAATGGAAATGCTAAGGATGAGAATATTCAACAAAAA : 26250
399 : LeuSerSerLysVal >>>> Target Intron 7 >>>> LeuAspAspLeuProG : 409
||||||||||||||| 523 bp ||||||||||||||||
LeuSerSerLysVal++ ++LeuAspAspLeuProG
26251 : CTTTCTTCTAAAGTAgt.........................agTTGGATGATTTACCTG : 26806
410 : luAsnSerProIleAsnIleValGlnThrProIleProIleThrThrSerValProLysA : 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
luAsnSerProIleAsnIleValGlnThrProIleProIleThrThrSerValProLysA
26807 : AAAACTCACCAATCAATATAGTTCAAACTCCAATTCCCATTACCACCTCAGTTCCTAAAC : 26866
430 : rgAlaLysSerGlnLysLysLysAlaLeuAlaAlaAlaLeuAlaThrAlaGlnGluTyrS : 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rgAlaLysSerGlnLysLysLysAlaLeuAlaAlaAlaLeuAlaThrAlaGlnGluTyrS
26867 : GTGCAAAAAGTCAGAAGAAGAAAGCTTTAGCAGCAGCCCTTGCCACAGCTCAAGAATATT : 26926
450 : erGluIleSerMetGluGlnLysLysLeuGln >>>> Target Intron 8 >>>> : 460
|||||||||||||||||||||||||||||||| 136 bp
erGluIleSerMetGluGlnLysLysLeuGln++ +
26927 : CAGAAATAAGTATGGAGCAAAAAAAATTACAGgt.........................a : 27093
461 : GluAlaLeuSerLysAlaAlaGlyLysLysAsnLysThrProValGlnLeuAspLeuGl : 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+GluAlaLeuSerLysAlaAlaGlyLysLysAsnLysThrProValGlnLeuAspLeuGl
27094 : gGAAGCTTTATCAAAAGCAgctggaaaaaagaataaaacacctgTGCAGCTAGATTTGGG : 27152
480 : yAspMetLeuAlaAlaLeuGluLysGlnGlnGlnAlaMetLysAlaArgGlnIleThrAs : 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
yAspMetLeuAlaAlaLeuGluLysGlnGlnGlnAlaMetLysAlaArgGlnIleThrAs
27153 : GGACATGTTAGCTGCTCTGGAAAAACAACAGCAAGCAATGAAAGCACGGCAAATTACTAA : 27212
500 : nThrArgProLeuSerTyrThr{V} >>>> Target Intron 9 >>>> {al}Va : 508
||||||||||||||||||||||{|} 3730 bp {||}||
nThrArgProLeuSerTyrThr{V}++ ++{al}Va
27213 : TACCAGGCCTCTGTCATATACA{G}gt.........................ag{TG}GT : 30969
509 : lThrAlaAlaSerPheHisThrArgAspSerAlaAsnArgLysProLeuThrLysSerGl : 528
||||||||||||||||||||||!:!||||||.!!||||||||||||||||||||||||||
lThrAlaAlaSerPheHisThrLysAspSerThrAsnArgLysProLeuThrLysSerGl
30970 : TACTGCAGCTTCTTTTCACACTAAAGACTCCACTAACAGAAAACCTTTAACCAAAAGTCA : 31029
529 : nProCysLeuThrSerPheAsnSerValAspIleAlaSerSerLysAlaLysLysGlyLy : 548
|||||||||||||!!!||||||||||||||||||||||||||||||||||||||||||||
nProCysLeuThrThrPheAsnSerValAspIleAlaSerSerLysAlaLysLysGlyLy
31030 : GCCCTGTTTGACAACCTTTAATTCTGTGGACATTGCTTCCTctaaagcaaagaaaggaaa : 31089
549 : sGluLysGluIleAlaLysLeuLysArgProThrAlaLeuLysLys >>>> Target : 564
|||||||||||||||||||||||||||||||||||||||||||||| 84
sGluLysGluIleAlaLysLeuLysArgProThrAlaLeuLysLys++
31090 : agagaaggaaattgcAAAACTAAAACGACCCACAGCACTTAAAAAGgt............ : 31139
565 : Intron 10 >>>> ValIleLeuLysGluArgGluGluLysLysGlyArgLeuThrVa : 578
4 bp ||||||||||||||||||||||||||||||||||||||||||||
++ValIleLeuLysGluArgGluGluLysLysGlyArgLeuThrVa
31140 : ..............aggttattttaaaagaaagagaggaaaagaaggggcGCTTAACTGT : 32023
579 : lAspHisAsnLeuLeuGlySerGluGluProThrGluMetHisLeuAspPheIleAspAs : 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lAspHisAsnLeuLeuGlySerGluGluProThrGluMetHisLeuAspPheIleAspAs
32024 : GGACCACAATCTTTTGGGATCCGAGGAACCAACAGAAATGCACTTAGATTTCATTGATGA : 32083
599 : pLeuProGlnGluIleValSerGlnGlu{A} >>>> Target Intron 11 >>>> : 608
||||||||||||||||||||||||||||{|} 2321 bp
pLeuProGlnGluIleValSerGlnGlu{A}++ +
32084 : TTTGCCACAGGAAATTGTTTCCCAGGAA{G}gt..........................a : 34433
609 : {sp}ThrGlyLeuSerMetProSerAspThrSerLeuSerProAlaSerGlnAsnSerP : 627
{||}|||||||||||||||||||||||||||||||||||||||||||||||||||||||
+{sp}ThrGlyLeuSerMetProSerAspThrSerLeuSerProAlaSerGlnAsnSerP
34434 : g{AT}ACTGGACTGAGCATGCCCAGTGATACTTCGCTCTCTCCAGCAAGCCAGAACTCTC : 34491
628 : roTyrCysMetThrProValSerGlnGlySerProAlaSerSerGlyIleGlySerProM : 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
roTyrCysMetThrProValSerGlnGlySerProAlaSerSerGlyIleGlySerProM
34492 : CATACTGTATGACACCTGTGTCACAAGGCTCTCCTGCTAGTTCTGGAATAGGCAGTCCAA : 34551
648 : etAlaSerSerThrIleThrLysIleHisSerLysArgPheArg{Gl} >>>> Targe : 662
||||||||||||||||||||||||||||||||||||||||||||{||}
etAlaSerSerThrIleThrLysIleHisSerLysArgPheArg{Gl}++
34552 : TGGCATCTTCAACAATAACCAAAATCCACAGCAAAAGATTTAGA{GA}gt.......... : 34600
663 : t Intron 12 >>>> {u}TyrCysAsnGlnValLeuCysLysGluIleAspGluCys : 675
7586 bp {|}|||||||||||||||||||||||||||||||||||||||
++{u}TyrCysAsnGlnValLeuCysLysGluIleAspGluCys
34601 : ................ag{G}TATTGTAATCAGGTTCTTTGTAAAGAGATTGATGAATGT : 42221
676 : ValThrLeuLeuLeuGlnGluLeuValSerPheGlnGluArgIleTyrGlnLysAspPro : 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ValThrLeuLeuLeuGlnGluLeuValSerPheGlnGluArgIleTyrGlnLysAspPro
42222 : GTGACTCTTCTTCTCCAAGAGCTTGTCAGTTTCCAGGAACGCATCTACCAAAAAGATCCT : 42281
696 : ValArgAlaLysAlaArgArgArgLeuValMetGlyLeuArgGluValThrLysHisMet : 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ValArgAlaLysAlaArgArgArgLeuValMetGlyLeuArgGluValThrLysHisMet
42282 : GTAAGAGCAAAAGCAAGGAGACGACTTGTTATGGGTCTAAGAGAAGTTACCAAACATATG : 42341
716 : LysLeuAsnLysIleLysCysValIleIleSerProAsnCysGluLysIleGlnSerLys : 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LysLeuAsnLysIleLysCysValIleIleSerProAsnCysGluLysIleGlnSerLys
42342 : AAGTTAAATAAGATCAAGTGTGTTATAATTTCTCCAAATTGTGAAAAAATCCAGTCAAAA : 42401
736 : {G} >>>> Target Intron 13 >>>> {ly}GlyLeuAspGluAlaLeuTyrAs : 744
{|} 890 bp {||}|||||||||||||||||||||||
{G}++ ++{ly}GlyLeuAspGluAlaLeuTyrAs
42402 : {G}gt..........................ag{GT}GGTCTGGATGAGGCTCTCTATAA : 43318
745 : nValIleAlaMetAlaArgGluGlnGluIleProPheValPheAlaLeuGlyArgLysAl : 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
nValIleAlaMetAlaArgGluGlnGluIleProPheValPheAlaLeuGlyArgLysAl
43319 : TGTTATAGCCATGGCACGGGAACAAGAAATTCCTTTTGTGTTTGCCCTTGGAAGGAAAGC : 43378
765 : aLeuGlyArgCysValAsnLysLeuValProValSerValValGlyIlePheAsnTyrPh : 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
aLeuGlyArgCysValAsnLysLeuValProValSerValValGlyIlePheAsnTyrPh
43379 : TCTAGGACGCTGTGTGAACAAGCTTGTTCCTGTTAGTGTAGTGGGAATCTTCAACTACTT : 43438
785 : eGlyAlaGlu >>>> Target Intron 14 >>>> SerLeuPheAsnLysLeuVa : 794
|||||||||| 2919 bp ||||||||||||||||||||
eGlyAlaGlu++ ++SerLeuPheAsnLysLeuVa
43439 : TGGTGCTGAGgt..........................agAGCCTGTTTAACAAGTTAGT : 46387
795 : lGluLeuThrGluGluAlaArgLysAlaTyrLysAspMetValAlaAlaMetGluGlnGl : 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lGluLeuThrGluGluAlaArgLysAlaTyrLysAspMetValAlaAlaMetGluGlnGl
46388 : AGAACTCACTGAGGAAGCCAGGAAAGCATATAAAGATATGGTTGCAGCAATGGAACAGGA : 46447
815 : uGlnAlaGluGluAlaLeuLysAsnValLysLysValProHisHisMetGlyHisSerAr : 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
uGlnAlaGluGluAlaLeuLysAsnValLysLysValProHisHisMetGlyHisSerAr
46448 : GCAGGCTGAGGAAGCCTTAAAGAATGTGAAGAAGGTACCACACCACATGGGACATTCTCG : 46507
835 : gAsnProSerAlaAlaSerAlaIleSerPheCysSerValIleSerGluProIleSerGl : 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
gAsnProSerAlaAlaSerAlaIleSerPheCysSerValIleSerGluProIleSerGl
46508 : GAATCCCTCTGCAGCAAGTGCCATTTCTTTCTGCAGTGTTATTTCTGAACCTATCTCTGA : 46567
855 : uValAsnGluLysGluTyr{G} >>>> Target Intron 15 >>>> {lu}ThrA : 863
|||||||||||||||||||{|} 3412 bp {||}||||
uValAsnGluLysGluTyr{G}++ ++{lu}ThrA
46568 : AGTAAATGAAAAGGAATAT{G}gt..........................ag{AA}ACAA : 50006
864 : snTrpArgAsnMetValGluThrSerAspGlyLeuGluThrSerGluAsnGluLysGluV : 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
snTrpArgAsnMetValGluThrSerAspGlyLeuGluThrSerGluAsnGluLysGluA
50007 : ATTGGAGAAACATGGTGGAAACTTCAGATGGACTAGAAACatcagaaaatgagaaagagg : 50066
884 : alSerCysLysHisSerThrSerGluLysProSerLysLeuProPheAspThrProThrV : 903
..||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
laSerCysLysHisSerThrSerGluLysProSerLysLeuProPheAspThrProThrV
50067 : caTCCTGTAAGCACAGCACTTCTGAAAAACCCAGTAAACTTCCATTTGACACACCCACTG : 50126
904 : alGlyLysGlnProSerLeuValAlaThrGlySerThrThrSerAlaThrSerAlaGlyL : 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
alGlyLysGlnProSerLeuValAlaThrGlySerThrThrSerAlaThrSerAlaGlyL
50127 : TTGGTAAGCAGCCGTCCTTAGTGGCTACAGGCAGTACTACCTCAGCTACAAGTGCTGGGA : 50186
924 : ysSerThrAlaSerAspLysGluGluValLysProAspAspLeuGluTrpAlaSerGlnG : 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ysSerThrAlaSerAspLysGluGluValLysProAspAspLeuGluTrpAlaSerGlnG
50187 : AATCCACAGCAAGCGATAAAGAGGAAGTGAAGCCAGATGACCTGGAATGGGCCTCACAGC : 50246
944 : lnSerThrGluThrGlySerLeuAspGlySerCysArgAspLeuLeuAsnSerSerIleT : 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lnSerThrGluThrGlySerLeuAspGlySerCysArgAspLeuLeuAsnSerSerIleT
50247 : AGAGTACAGAGACTGGCTCTTTGGATGGCAGTTGCCGAGATCTTTTGAATTCCTCCATCA : 50306
964 : hrSerThrThrSerThrLeuValProGlyMetLeuGluGluGluAspAspGluAspGluG : 983
|||||||||||||||||||||||||||||||||||||||||:::||||||||||||||||
hrSerThrThrSerThrLeuValProGlyMetLeuGluGluAspAspAspGluAspGluG
50307 : CCAGCACCACCAGCACTCTTGTACCTGGCATGCttgaagaagatgatgatgaagatgagg : 50366
984 : luGluGluGluAspTyrThrHisGluProIleSerValGluValGlnLeuAsnSerArgI : 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
luGluGluGluAspTyrThrHisGluProIleSerValGluValGlnLeuAsnSerArgI
50367 : aggaggaggaagattaTACTCATGAACCCATATCTGTAGAAGTGCAgctcaacagcagaa : 50426
1004 : leGluSerTrpValSerGluThrGlnArgThrMetGluThrLeuGlnLeuGlyLysThrL : 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
leGluSerTrpValSerGluThrGlnArgThrMetGluThrLeuGlnLeuGlyLysThrL
50427 : ttgagtCTTGGGTGTCAGAGACCCAGAGAACTATGGAAACCCTTCAGCTTGGAAAAACCC : 50486
1024 : euAsnGlySerGluGluAspAsnValGluGlnSerGlyGluGluGluAlaGluAlaProG : 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
euAsnGlySerGluGluAspAsnValGluGlnSerGlyGluGluGluAlaGluAlaProG
50487 : TTAATGGTTCTGAGGAAGACAATGTAGAGCAAAGtggagaggaggaagcagaggcgCCTG : 50546
1044 : luValLeuGluProGlyMetAspSerGluAlaTrpThrAlaAspGlnGlnAlaSerHisG : 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||! !|
luValLeuGluProGlyMetAspSerGluAlaTrpThrAlaAspGlnGlnAlaSerProG
50547 : AGGTGCTGGAGCCAGGGATGGACAGTGAGGCGTGGACTGCTGATCAGCAGGCCAGTCCTG : 50606
1064 : lyGlnGlnLysSerSerAsnCysSerSerLeuIleLysGluHisSerAspSerAsnTyrT : 1083
||||||||||||||||||||||||||||||||! !|||||||||||||||||||||||||
lyGlnGlnLysSerSerAsnCysSerSerLeuAsnLysGluHisSerAspSerAsnTyrT
50607 : GGCAGCAGAAGTCCAGCAACTGCAGCTCACTCAACAAAGAGCACTCTGATTCTAATTACA : 50666
1084 : hr : 1083
||
hr
50667 : CA : 50668
vulgar: SPP00000333_2.0 0 1083 . KV389435.1:subseq(7246006,100668) 5060 50668 + 5384 M 60 180 S 0 2 5 0 2 I 0 1779 3 0 2 S 1 1 M 108 324 5 0 2 I 0 2283 3 0 2 M 45 135 S 0 1 5 0 2 I 0 5045 3 0 2 S 1 2 M 77 231 S 0 1 5 0 2 I 0 1280 3 0 2 S 1 2 M 38 114 5 0 2 I 0 7617 3 0 2 M 45 135 5 0 2 I 0 1970 3 0 2 M 27 81 5 0 2 I 0 519 3 0 2 M 56 168 5 0 2 I 0 132 3 0 2 M 47 141 S 0 1 5 0 2 I 0 3726 3 0 2 S 1 2 M 56 168 5 0 2 I 0 840 3 0 2 M 44 132 S 0 1 5 0 2 I 0 2317 3 0 2 S 1 2 M 53 159 S 0 2 5 0 2 I 0 7582 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 886 3 0 2 S 1 2 M 51 153 5 0 2 I 0 2915 3 0 2 M 73 219 S 0 1 5 0 2 I 0 3408 3 0 2 S 1 2 M 222 666
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local gene 5061 50668 5384 + . gene_id 1 ; sequence SPP00000333_2.0 ; gene_orientation +
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 5061 5242 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 5061 5242 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 5243 5244 . + . intron_id 1 ; splice_site "gt"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 5243 7025 . + . intron_id 1
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 7024 7025 . + . intron_id 0 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 7026 7350 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 7026 7350 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 7351 7352 . + . intron_id 2 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 7351 9637 . + . intron_id 2
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 9636 9637 . + . intron_id 1 ; splice_site "ag"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 9638 9773 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 9638 9773 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 9774 9775 . + . intron_id 3 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 9774 14822 . + . intron_id 3
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 14821 14822 . + . intron_id 2 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 14823 15056 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 14823 15056 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 15057 15058 . + . intron_id 4 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 15057 16340 . + . intron_id 4
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 16339 16340 . + . intron_id 3 ; splice_site "ag"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 16341 16456 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 16341 16456 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 16457 16458 . + . intron_id 5 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 16457 24077 . + . intron_id 5
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 24076 24077 . + . intron_id 4 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 24078 24212 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 24078 24212 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 24213 24214 . + . intron_id 6 ; splice_site "gt"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 24213 26186 . + . intron_id 6
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 26185 26186 . + . intron_id 5 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 26187 26267 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 26187 26267 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 26268 26269 . + . intron_id 7 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 26268 26790 . + . intron_id 7
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 26789 26790 . + . intron_id 6 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 26791 26958 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 26791 26958 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 26959 26960 . + . intron_id 8 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 26959 27094 . + . intron_id 8
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 27093 27094 . + . intron_id 7 ; splice_site "aG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 27095 27236 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 27095 27236 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 27237 27238 . + . intron_id 9 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 27237 30966 . + . intron_id 9
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 30965 30966 . + . intron_id 8 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 30967 31136 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 30967 31136 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 31137 31138 . + . intron_id 10 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 31137 31980 . + . intron_id 10
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 31979 31980 . + . intron_id 9 ; splice_site "ag"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 31981 32113 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 31981 32113 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 32114 32115 . + . intron_id 11 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 32114 34434 . + . intron_id 11
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 34433 34434 . + . intron_id 10 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 34435 34597 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 34435 34597 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 34598 34599 . + . intron_id 12 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 34598 42183 . + . intron_id 12
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 42182 42183 . + . intron_id 11 ; splice_site "aG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 42184 42404 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 42184 42404 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 42405 42406 . + . intron_id 13 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 42405 43294 . + . intron_id 13
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 43293 43294 . + . intron_id 12 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 43295 43449 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 43295 43449 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 43450 43451 . + . intron_id 14 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 43450 46368 . + . intron_id 14
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 46367 46368 . + . intron_id 13 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 46369 46588 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 46369 46588 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice5 46589 46590 . + . intron_id 15 ; splice_site "GT"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local intron 46589 50000 . + . intron_id 15
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local splice3 49999 50000 . + . intron_id 14 ; splice_site "AG"
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local cds 50001 50668 . + .
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local exon 50001 50668 . + . insertions 0 ; deletions 0
KV389435.1:subseq(7246006,100668) exonerate:protein2genome:local similarity 5061 50668 5384 + . alignment_id 1 ; Query SPP00000333_2.0 ; Align 5061 1 180 ; Align 7027 62 324 ; Align 9638 170 135 ; Align 14825 216 231 ; Align 16343 294 114 ; Align 24078 332 135 ; Align 26187 377 81 ; Align 26791 404 168 ; Align 27095 460 141 ; Align 30969 508 168 ; Align 31981 564 132 ; Align 34437 609 159 ; Align 42185 663 219 ; Align 43297 737 153 ; Align 46369 788 219 ; Align 50003 862 666
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis