------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LOCP02000599.1:subseq_602831,200000_ Strand = - Positions = 48740 - 48668
 Found by:  Infernal (score=31.95) Covels (score=35.14)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -17.39

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((---....([[{((({(({((((................))))}))})))}]])..--..-.)))))))))
 target  GGAUGCCAG---ACAAUGACGACCUGCGCAGAAACCCACCCUGUGGGCUGCCCAUGUCCGAGCC--CC-CCUGGUGUUU
                         ****           ^^^                        ****                 

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = LOCP02000599.1:subseq_602831,200000_ Strand = - Positions = 83881 - 83796
 Found by:  Infernal (score=18.94) Covels (score=17.3)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -18.54

         ..(((((((..................(((((((((((((((....................)))))))))))))))........)))))))..
 model   uucggucaugcg-----------UuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(((((((((.................{[[{((({((((((------................))))))})))}]]}..--...))))))))).
 target  CCCUCUGAAACUCCUUGUAAUUCUUUAUGAGGGGUGAAAUG------GAUUGCAAGCUAUGCACGUUUCUCCUGGAUGC--CACUUUCAGAGGA
                                    ****                                          ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = LOCP02000599.1:subseq_602831,200000_ Strand = + Positions = 710 - 788
 Found by:  Infernal (score=11.76) Covels (score=4.16)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 1
 Free Energy = -9.59

         ..(((((((..........(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         ..(((({{(..........([[{((((({((((.................))))}))).))}]])..--..-.)}}))))..
 target  UCCAGGUGCACGGAGUCCAUGACGGUGUUUCUGCCCUCCGCCAGGUCCCACAGGCACAGCCUGAGGU--CC-CGGCCCUGAC
                            ****          ^^                          ****                 

------- SECIS element -- id:4 -- grade:C ----
 Chromosome = LOCP02000599.1:subseq_602831,200000_ Strand = - Positions = 172835 - 172755
 Found by:  Infernal (score=11.65) Covels (score=7.8)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -9.61

         ..(((((((.......(((((((((((((((...................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(([(((((--....([[{((((((({{{(...................)}}})))))))}]])......-..)))))]))..
 target  CAGUGUUUGG--CCAAUGAACACUUGCCCAAAAGGCUCCCUAGAGGAUCAUCAAGCAAGUGCGAGAAAGCA-ACUCAAAAGCAC
                         ****           ^^                            ****                   

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = LOCP02000599.1:subseq_602831,200000_ Strand = - Positions = 70920 - 70850
 Found by:  Infernal (score=10.8) Covels (score=10.54)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -23.36

         ..(((((((........(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ((((((((((.......([[((((((((((........---------..))))))))))]])......-..))))))))))
 target  CUGGCCUUUGAGUGGAAUGAUGGUGUUUGUGAAAUAUA---------AAACAGAUGCCAGAGUGUGGA-AGCAAGGGCUGG
                          ****          ^^^                        ****