------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LOCP02001152.1:subseq_125645,200000_ Strand = - Positions = 49965 - 49893
 Found by:  Infernal (score=16.37) Covels (score=19.16)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -22.67

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[{(({(((((((..................)))))))}))}]]}..--..-.)))))))..
 target  CCCGGGGAC---AGAAUGAAGCGCUCAGCGUCCCGGGAACACCUCCCUCGCUGAGGGCCGACGC--AC-CGUCUCUGAG
                         ****           ^^                         ****                 

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = LOCP02001152.1:subseq_125645,200000_ Strand = - Positions = 132950 - 132868
 Found by:  Infernal (score=15.48) Covels (score=6.43)
 Stem2 length = 7   Apical loop length = 24   Insertion in stem2 = 0, 0
 Free Energy = -8.76

         ..(((((((.......(((((((((((((((......................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .((((((((---(...([[(((({({{(((........................)))}})}))))]])......-..))))))))).
 target  AGAGGGUUU---CUGAUGAAAACAGACAUCCAAAUUAAUCUCCCAAGUUCUGGAGGUACCAGUUUGAAACAAUU-UUGGAACUCUUA
                         ****           ^^^                              ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = LOCP02001152.1:subseq_125645,200000_ Strand = + Positions = 82363 - 82454
 Found by:  Infernal (score=11.64) Covels (score=6.74)
 Stem2 length = 11   Apical loop length = 23   Insertion in stem2 = 0, 0
 Free Energy = -17.71

         ..(((((((...............(((((((((((((((.......................)))))))))))))))........)))))))..
 model   uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcC--------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((..............([[(((([(((((((.......................)))))))]))))]])..--...))))))))..
 target  AUUUGCCCUGAGUCAGAUAACCAAUGAGACCAUGCUCCUAACUAGUCUACCUCUUCUGUAGAAGGGGUGGGGUUGAGGA--UUAUGGGGUAAUU
                                 ****           ^^                                ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = LOCP02001152.1:subseq_125645,200000_ Strand = - Positions = 80836 - 80764
 Found by:  Infernal (score=11.16) Covels (score=6.37)
 Stem2 length = 7   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -21.47

         ..(((((((............(((((((((((.......................)))))))))))........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((((.........{[[((((((((..................-----))))))))]]}----))-))))))))..
 target  UGCAGGGCAUGGCAGGCUUCAUGAUGGCCAGGGCUGGGUCAGGGGAUAGA-----CCUGGCCAGAC----UU-AUGUUUUGGA
                              ****                                     ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = LOCP02001152.1:subseq_125645,200000_ Strand = + Positions = 109549 - 109618
 Found by:  Infernal (score=10.04)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 1, 0
 Free Energy = -11.94

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((((((.--....{[[(((((((.((((......--------...)))))))))))]]}......-...)))))))..
 target  UCUGGGAUGG--UCUGUGACCUGGGGGUCUUCACAGU--------AGUGAGAUCUCAGGGAUGAAGAU-UGGCAUCUUGUC
                         ****                                      ****