_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-21
 Query name: gi|30231240|ref|NP_840079.1| 15 kDa selenoprotein precursor [Danio rerio] >gi|172046121|sp|Q802F3.2|SEP15_DANRE RecName: Full=15 kDa selenoprotein; Flags: Precursor >gi|29165356|gb|AAO65272.1| 15 kDa selenoprotein SeP15 [Danio rerio]
 Query range: 6-153  (total 153)

 Target: /data/www-rg/seblastian_results/849535871/tempfiles/temptarget.fasta
 Chromosome: LOCP02000277.1:subseq_1735833,200000_ Strand: +
 Positions:
 -Exon 1  35315        35512
 -Exon 2  49997        50060
 -Exon 3  56647        56696
 -Exon 4  57364        57492

 Redox box: no

Query   YLLWLLPLLQGLASYGAELSSEACRELGFSSNLLCSSCELLGQFSLNQLDLPCRQCCQEEAQLENRK <---Intron---> LYPGAILEVCGUKLGRF
        |/|/|/   | ////||| ||||| |||||||||||||/|||||/| |||  || ||||||| | /| <  14484bp   > || ||||||||||||||
Target  YVLFLIFYFQ-VSAFGAEFSSEACSELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKK                LYAGAILEVCGUKLGRF
        tgttcatttc-gtgtgggtttggtagtgttaatctattgccgctaccccgcgtagttcgggctgaaa                ctgggacggtgtatgat
        attttttata-tcctgcatccacggatgtcgattggcgattgatattatacagggggaaacatacaa                tacgcttatgggatggt
        ttatcttttg-gtacgagtaaatccgacccccgtccctcttaatcgtggttctaactgaaagcacag                ataatttactaaagggc
                                                                                                      *     

Query   PQVQA <---Intron---> FVRSDKPKLFRGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
        ||||| <   6586bp   > |||||||||||||||| <   667bp    > |||||||||||||||||||||||||||||||||||||||||||
Target  PQVQA                FVRSDKPKLFRGLQIK                YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
        ccgcg                tgaagacactagccaa                tgcgtgcgcactggagaagggcaacataagagggtcagatgca
        cata                cttggaacattggtata                atggcacttattaaagatcaatgttagacagtaattgaatagt
        taca                ttcgttacagcaaaacg                ttttgctaagtgtctgcttaaacccagcactaaacataggaca
                                                                                                        
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 583 ; UGA-SECIS: 790

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LOCP02000277.1:subseq_1735833,200000_ Strand = + Positions = 58076 - 58157
 Found by:  Infernal (score=29.22) Covels (score=29.65)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -17.35

         ..(((((((.........(((((((((((((((...............))))))))).))))))..........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuu-u-uuucaugaccggc
         ((((((((((........{[[((((((((((((...............))))))))).)))]]}......-..))))))))))
 target  CACAAAGAUUAGCAUUAAUGAAGACUACACAGAAAACCUUUUUGAGGAUUUGUGUGGAUCUGAUAUUUAG-CAAAUUUUUGUG
                           ****           ^^^                        ****