_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-20
 Query name: gi|1012091690|ref|XP_015992082.1| PREDICTED: methionine-R-sulfoxide reductase B1 [Rousettus aegyptiacus]
 Query range: 1-116  (total 116)

 Target: /data/www-rg/seblastian_results/476527618/tempfiles/temptarget.fasta
 Chromosome: LOCP02000142.1:subseq_474926,200000_ Strand: +
 Positions:
 -Exon 1  50000        50054
 -Exon 2  51760        51908
 -Exon 3  52225        52339
 -Exon 4  53279        53307

 Redox box: no

Query   MSFCSFFGGEVFQNHFEPG <---Intron---> VYVCTKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKCPEHNRPEALK <---Intron---> 
        ||||||||||||||||||| <   1705bp   > ||||||||||||||||||||||||||||||||||||||||||||||||| <   316bp    > 
Target  MSFCSFFGGEVFQNHFEPG                VYVCTKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKCPEHNRPEALK                
        atttattggggtcactgcg                gtgtaatgtgcttactatgcttctcgtagaacggaggatcgcaccggta                
        tctggttggattaaatac                gtatgcaggaattcggcaacacccgcctcactacagtcagcaaagcacta                
        ggcccccgcgtcgcctgg                tccgccgtctgcccccagtatatagacctgcctcctgcgtagttgtacag                
                                                                                                            

Query   VSCGRCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPKG <---Intron---> KETLASQRK
        ||||||||||||||||||||||||||||||||||||||| <   939bp    > |||||||||
Target  VSCGRCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPKG                KETLASQRK
        gttgatgagtgcgtcaggcacgctcttataatcatgcag                agatgtcaa
        tcgggggagtgaattaagcaggacgtgttggctattca                gaactccaga
        ccccgtcttgctgtgctcaggggcccaacctaggtcta                caatgtcggg
                                  *                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 483 ; UGA-SECIS: 546

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LOCP02000142.1:subseq_474926,200000_ Strand = + Positions = 53791 - 53861
 Found by:  Infernal (score=26.61) Covels (score=23.04)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -20.34

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---....{[[{{((((((((((.....-.........))))))))))}}]]}..--..-.)))))....
 target  CCCAGUCAC---UACAUGAUUUGCUCUGGCUAAACC-CUUCCAGGCAGCCAGAGUGCUGACGA--UC-CGUGACCCAU
                         ****           ^^^                       ****