_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-39
 Query name: gi|1012240835|ref|XP_015974190.1| PREDICTED: glutathione peroxidase 3 [Rousettus aegyptiacus]
 Query range: 1-225  (total 225)

 Target: /data/www-rg/seblastian_results/588260413/tempfiles/temptarget.fasta
 Chromosome: LOCP02000605.1:subseq_465725,200000_ Strand: -
 Positions:
 -Exon 1  56531        56614
 -Exon 2  51688        51841
 -Exon 3  50411        50528
 -Exon 4  49899        49998
 -Exon 5  49283        49501

 Redox box: no

Query   MAWLLRASCLLSLLLAGFVPLSRGQKSK <---Intron---> VDCHAGMSGTIYDYGALTIDGQEYIPFKQYAGKYVLFVNVATYUGLTGQYIE <--
        |||||||||||||||||||||||||||| <   4689bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| <  
Target  MAWLLRASCLLSLLLAGFVPLSRGQKSK                VDCHAGMSGTIYDYGALTIDGQEYIPFKQYAGKYVLFVNVATYUGLTGQYIE    
        agtcccgttcctcccggtgccacgcata                ggtcggaagaatgtggcaaggcgtactactggatgctgaggattgcagctag    
        tcgttgccgttctttcgttctgggaaca                tagacgtggctaaagctctagaaatctaaacgaattttatccaggtcgaat     
        ggggccacctctccgccccgacgggggg                gccttcgtccccccacccccggaccccggttcaccctccgcccacggcgct     
                                                                                               *            

Query   -Intron---> LNALQEELAPFGLVILGFPCNQFGKQEPGDNSEILPALK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK
         1159bp   > ||||||||||||||||||||||||||||||||||||||| <   412bp    > |||||||||||||||||||||||||||||||||
Target              LNALQEELAPFGLVILGFPCNQFGKQEPGDNSEILPALK                YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK
                    cagccggcgctgcgacgtctactgacgcggatgaccgca                tgacgggtgcatcctgagggaggagcattatca
                   atactaaatcctgttttgtcgaatgaaacgaacattccta                atgcgggttcatattaagatagaaaaatactta
                   agtaaaagtaattgctgcccccataaggaaccagcatcc                gtgaatgctcctcactgaatgcggagggccgcgg
                                                                                                            

Query    <---Intron---> NSCLPTSELLGSPNSLFWEPMKNHDIRWNFEKFLVGPNGIPIMRWHHRTTVSNVKMDILAYMRRQAAQGIRGK
         <   397bp    > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target                  NSCLPTSELLGSPNSLFWEPMKNHDIRWNFEKFLVGPNGIPIMRWHHRTTVSNVKMDILAYMRRQAAQGIRGK
                        attccatgccgtcaacttgcaaacgactatgatcggcagacaactcccaagaagaagacgtaaccggcgaaga
                        acgtcccattgccagttgactaaaatggataatttgcagtcttggaagcctgatatattcatggaccagtgga
                        cctcccggcgcatccccgacggcttccgctggcggaaccaccgcgccgcgcctcggccgccggggacggcggg
                                                                                                 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 652 ; UGA-SECIS: 1111

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LOCP02000605.1:subseq_465725,200000_ Strand = - Positions = 48630 - 48555
 Found by:  Infernal (score=25.01) Covels (score=32.06)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -22.38

         ..(((((((.......(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         (({(((({(.--....([[((({((((((((.....--........))))))))})))]]).......-...)}))))}))
 target  GGGUGGCGUC--UCCAUGAGGGAGGGGUCCGAAGCC--CUUGUGGGCGGACCUCCCCUGAGACUGUCU-GAAGGGCCAGCC
                         ****           ^^                        ****