_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-77
 Query name: gi|1012111313|ref|XP_015997216.1| PREDICTED: glutathione peroxidase 2 [Rousettus aegyptiacus]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/699889243/tempfiles/temptarget.fasta
 Chromosome: LOCP02000196.1:subseq_242811,200000_ Strand: +
 Positions:
 -Exon 1  50000        50221
 -Exon 2  52150        52497

 Redox box: no

Query   MAYIAKSFYDLTAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTHLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1928bp   > ||||||||||
Target  MAYIAKSFYDLTAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTHLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggaca
        tcatcactaatcctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gtctcgcccccttccgtgggaccctcacgcggtgcgcgcaaaccgccccccggacctcgcggttcccccatatg                gccgtggcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLVQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLVQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        acatgccgggtccatacgcatggagcagccgtgtcagacctctggcttcaagcataatacgcctgggtatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggtacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctcctatacatag
        tcgtcctgtacgcctctcagtcattgtgttccccggcgctctcccattcggtcgcctgcagccatgcgctggcttgggggccaccccgctgcctgtccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 223 ; UGA-SECIS: 673

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LOCP02000196.1:subseq_242811,200000_ Strand = + Positions = 52721 - 52785
 Found by:  Infernal (score=31.33) Covels (score=23.43)
 Stem2 length = 8   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -22.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---(...([[{((((({{(((......-..-----...)))}})))))}]])----...))))))))..
 target  GGCCUUCAC---AGAAUGAUGGCACCUUCCUAAACU-UG-----UACGGACAGUGUCUGAG----ACGUGUGAAGGGG
                         ****           ^^^                       ****