_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-40
 Query name: gi|1012173513|ref|XP_016005420.1| PREDICTED: glutathione peroxidase 1 [Rousettus aegyptiacus]
 Query range: 1-204  (total 204)

 Target: /data/www-rg/seblastian_results/70259344/tempfiles/temptarget.fasta
 Chromosome: LOCP02000295.1:subseq_1068132,200000_ Strand: -
 Positions:
 -Exon 1  50563        50817
 -Exon 2  50000        50356

 Redox box: no

Query   MCAAQQAAAAQAAGVSVYPFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ <---Intron--->
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   206bp    >
Target  MCAAQQAAAAQAAGVSVYPFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ               
        atggccggggcggggtgtcttgcccggggcgacgtccgagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc               
        tgccaaccccaccgtctactccgctcggactgtgctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa               
        gcctggggcgggcgccgccccgcgggcggcgcgccggcgggccgtgggcacagcgcctggcggggccccgcgggcccgccgcgtg               
                                                         *                                                  

Query    ENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAKAHPLFAFLKEALPAPSDTTTALMTDPKFIIWSPVCRNDISWNFEKFLVGRDGVPVRRYSHHF
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target   ENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAKAHPLFAFLKEALPAPSDTTTALMTDPKFIIWSPVCRNDISWNFEKFLVGRDGVPVRRYSHHF
         gagaaggacatcatgccgggtgcatactgatggaggagccctgttaggccgcagaaagcaagcataattcgtcagattatgatcggcgggcgcatacct
         aacaaaattactaatgcgggtacatcttaagatagcacacttcttaactcccgaccccttcacatttgcctggaatcgataatttggagtctggagaat
         accacagcgttcgccacccgcaccccccggcggccaggcgccccgggtgcgttccccgcgctcgcccgtgaccccccgccggctgcgccttgcacccct
                                                                                                            

Query   PTIDIEPDIETLLSQGPSSA
        ||||||||||||||||||||
Target  PTIDIEPDIETLLSQGPSSA
        caagagcgagacctcgcaag
        cctatacatacttcagcggc
        ggcccgcccacggcggtctc
                            
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 48 ; UGA-SECIS: 510

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LOCP02000295.1:subseq_1068132,200000_ Strand = - Positions = 49951 - 49877
 Found by:  Infernal (score=39.64) Covels (score=32.43)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -24.54

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..((((((((......{[[{((((((.(((((........-----..)))))))))))}]]}......-..))))))))..
 target  CCGGGGGUUUCAUCCAUGAUGGUGUUUCCUCUAAACCUGC-----AAGGAGGAACACCUGAUGUCCAG-GAAAAUCCCCCG
                         ****            ^^^                       ****