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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 3e-38
 Query name: gi|989989920|ref|XP_015450641.1| PREDICTED: type I iodothyronine deiodinase isoform X2 [Pteropus alecto]
 Query range: 1-200  (total 201)

 Target: /data/www-rg/seblastian_results/466714475/tempfiles/temptarget.fasta
 Chromosome: LOCP02000064.1:subseq_958287,200000_ Strand: -
 Positions:
 -Exon 1  55579        55771
 -Exon 2  50053        50196
 -Exon 3  44597        44796
 -Exon 4  42722        42784

 Redox box: no

Query   MNRKNPHFSFDNWLPTLFSTQYFWFVLKVRWQQLEDTTKEGGLAPNCPVVCLSGQRCNIWDFMQG <---Intron---> NRPLVLNFGSCTUPSFLLK
        |||/|||||||||||/||  |||||||||||||||||||||||||/|||||||||| |||||||| <   5382bp   > |||||||||||||||||||
Target  MNRRNPHFSFDNWLPSLFGIQYFWFVLKVRWQQLEDTTKEGGLAPDCPVVCLSGQRYNIWDFMQG                NRPLVLNFGSCTUPSFLLK
        aacaacctttgatccactgacttttgcagctcccggaaagggcgcgtcggtctgcctaatgtacg                aactgcatgatatcttcta
        taggacatctaagtcgttgtaatgtttatggaataaccaaggtccagcttgtcgagaatgatta                gagctttatgggcgccttta
        gcggctttctccgcacccccgtcgccagctgaaggcatgaatgcacctgcccaaggcctgccga                ccaagggttattcatattga
                                                                                                     *      

Query   FDQFKKLIEDFSSIADFLVIYIEEAHASD <---Intron---> GWAFKNNVKIRNHRNLQERLQAARMLLDRSPQCPVVVDTMKNQSSHLYAALPERL
        ||||||||||||||||||||||||||||| <   5256bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  FDQFKKLIEDFSSIADFLVIYIEEAHASD                GWAFKNNVKIRNHRNLQERLQAARMLLDRSPQCPVVVDTMKNQSSHLYAALPERL
        tgctaacaggtataggtcgatagggcgtg                gtgtaaagaaaaccaccgcccggcaccgaacctcggggaaaacaacctggccgac
        taataattaatgctcattttataacacc                aggctaaatatgaagataagtaccgtttaggcagctttactaaaggatacctcagt
        tcacgattacttcaatttctctaaataa                tcgttgccgacgccgccgacggactgggcaccgctgggcaggcgcccccaagtggt
                                                                                                            

Query   YVLQEGRILYK <---Intron---> GKPGPWNYHPEEVHAVLEKLH
        ||||||||||| <   1812bp   > ||||||||||||| |||||||
Target  YVLQEGRILYK                GKPGPWNYHPEEVRAVLEKLH
        tgccggaacta                gacgctatccgggcggcgacc
        attaaggttaa                gacgcgaaacaatgcttaata
        tgcggcgcccg                tatctgcttagattttgagcc
                                                        
 Sequence until next stop: 
GGTTAA
 G  * 

 Distance CDS-SECIS: 857 ; UGA-SECIS: 1223

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LOCP02000064.1:subseq_958287,200000_ Strand = - Positions = 41864 - 41796
 Found by:  Infernal (score=26.34) Covels (score=22.4)
 Stem2 length = 8   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -7.5

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((.--....{[[{(({((({(((.........-----...)))})))}))}]]}..--....))))))...
 target  UUCAUAUUUG--UUUAUGACGGCCACAGCUUAAAGUACA-----CACAGCCGUGACUUGAUUU--GAAAAAAUAUAUA
                         ****           ^^^                       ****