------- SECIS element -- id:1 -- grade:B ---- Chromosome = LOCP02000945.1:subseq_222078,200000_ Strand = + Positions = 57435 - 57517 Found by: Infernal (score=12.85) Covels (score=0.06) Stem2 length = 9 Apical loop length = 30 Insertion in stem2 = 0, 0 Free Energy = -10.71 ..(((((((.......(((((((((((((((..........................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-----------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...(((((((--....([[((((((((((..............................))))))))))]])----...)))))))... target UCCUUAGAGC--AGCAUGAGGAUUUCUGAGGAAGGAGAAUUUGCUUCUGGCCUGGGGAGUCAGGAAUUUGAA----UUGGUUUUAGAAG **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = LOCP02000945.1:subseq_222078,200000_ Strand = + Positions = 108415 - 108493 Found by: Infernal (score=10.38) Covels (score=8.49) Stem2 length = 9 Apical loop length = 21 Insertion in stem2 = 0, 0 Free Energy = -14.21 ..(((((((.......(((((((((((((((.........................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ((((((({(.......{[[[(({(((((((------(...................))))))))}))]]]}..--..-.)}))))))) target GCCACAGUGCUGAAUGUGAAGGAAAGGGCU------UGGUUCAUUGGUAGUGAGGGGGGCUUUUCCCGGAUCC--UC-UCCUUGUGGU **** ****