------- SECIS element -- id:1 -- grade:B ---- Chromosome = LOCP02000927.1:subseq_154930,200000_ Strand = + Positions = 98683 - 98785 Found by: Infernal (score=11.11) Covels (score=1.87) Stem2 length = 11 Apical loop length = 22 Insertion in stem2 = 0, 0 Free Energy = -8.46 ..(((((((...........................(((((((((((((((......................)))))))))))))))........))))))).. model uucggucaugcg--------------------UuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .({((((((...........................{[[(((((((((([(......................)]))))))))))]]}..--....))))))}). target UAAGGGGAGAGGUUUGAGCCUCCAGUGUUUCGUGUGUGAUCUAACAUUUACAAAGCACAGGAGAAGUCAGUAAGGAGAUGUUAGAGAUGU--ACUCUUCCUUCUC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = LOCP02000927.1:subseq_154930,200000_ Strand = - Positions = 13254 - 13185 Found by: Infernal (score=10.94) Stem2 length = 7 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -13.26 ..(((((((.........((((((((((((.....................))))))))))))........))))))).. model uucggucaugcg--UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc (({({(((((........([[{(((({(((...............------)))}))))}]])----...)))))})})) target UCUGAGCCUGUUCCCCCAUGAUGGGGCGGGGGACGGGGACGGCAA------CCCUCUCCUGAG----ACCUAGGCCUUGG **** ****