------- SECIS element -- id:1 -- grade:A ---- Chromosome = LOCP02000762.1:subseq_312434,200000_ Strand = + Positions = 65912 - 65982 Found by: Infernal (score=15.39) Covels (score=25.71) Stem2 length = 9 Apical loop length = 18 Insertion in stem2 = 0, 0 Free Energy = -11.97 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..({({{((---(...{[[{((({((((((..................))))))})))}]]}----..-)))}})}).. target CACCGCCUC---UCCAUGACGGCAGAGACGUCCAGUCAGGACCUGACCCGUCUCCGUCCGAU----GC-GGACUCAGCA **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = LOCP02000762.1:subseq_312434,200000_ Strand = - Positions = 143966 - 143877 Found by: Infernal (score=10.03) Covels (score=3.11) Stem2 length = 10 Apical loop length = 12 Insertion in stem2 = 0, 1 Free Energy = -14.75 ..(((((((........................(((((((((((((((...............))))))).))))))))........))))))).. model uucggucaugcg-----------------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccggc .([((((((........................([[(((((({(((((.....---.......)))))}).)))))]])..--..-.))))))]). target CUGUCUCCUCAUGGCAGGACAUCAAGACCUGGAUGAAGGACAAGUCCGAGGUG---GAGGUGGUGGAUCUGGUCCUGAAAC--UU-CGGGAGAAGC **** ****