------- SECIS element -- id:1 -- grade:C ---- Chromosome = LOCP02000020.1:subseq_2800138,200000_ Strand = - Positions = 163879 - 163807 Found by: Infernal (score=12.91) Covels (score=5.46) Stem2 length = 7 Apical loop length = 12 Insertion in stem2 = 1, 0 Free Energy = -9.3 ..(((((((.......((((((((((.(((((................)))))))))))))))...........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc ....(((((---(...{[[{(({({{.((((------............))))}})}))}]]}.......-..)))))).... target CUUCGGCCC---AUUAUGAUGUCUACUCACC------AGCUACAGUUGAGGUGUCACACUGAUGUCACAU-GCUGGGUCAUAA **** **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = LOCP02000020.1:subseq_2800138,200000_ Strand = - Positions = 77091 - 77027 Found by: Infernal (score=11.32) Covels (score=10.26) Stem2 length = 8 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -6.64 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((({((.--....([[{((((({(((.------.............)))})))))}]])----.--.))})))).. target AAAGUUAUAA--AGAAUGAUGGUUUCCUCU------CUAGCUCCCAUCUGAGAGAAUCUGAA----U--CUAAAGCUGC **** ****