_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-21
 Query name: gi|820980696|ref|XP_012371964.1| PREDICTED: 15 kDa selenoprotein, partial [Octodon degus]
 Query range: 8-145  (total 145)

 Target: /data/www-rg/seblastian_results/255651927/tempfiles/temptarget.fasta
 Chromosome: CM003718.2:subseq_16452160,120548_ Strand: +
 Positions:
 -Exon 1  49997        50167
 -Exon 2  61008        61071
 -Exon 3  68744        68793
 -Exon 4  70420        70548

 Redox box: no

Query   SVSAFKEQFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKK <---Intron---> LYAGAILEVCGUKLGRFPQVQA <---
         || /  | |||||||||||||||||||/|||||/| |||| || ||||||| ||/| <  10840bp   > |||||/|||||||||||||||| <   
Target  QVSVYGAQLSSEACRELGFSSNLLCSSCNLLGQFSLNQLDPFCRECCQEEAQLETRK                LYAGAVLEVCGUKLGRFPQVQA     
        cgagtggccttggtagcgttaatctattaccgctacactgcttagttcgggccgaaa                ctggggcggtgtacgatccgcg     
        atgtagcatccacggatgtcgattggcgattgatgtaatactggaggaaacatacga                tacgcttatgggatggtcata      
        gatttaaggacatcgggcccttggctcccttggctgtggtaccagccaaatggatag                gtaatcaaataaagagctacg      
                                                                                            *               

Query   Intron---> FVRSDKPKLFRGLQIK <---Intron---> YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERI
        7672bp   > |||||||||||||||| <   1626bp   > ||||||||||||||||||||||||||||||||||||||||||/
Target             FVRSDKPKLFRGLQIK                YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERV
                   tgaagacactagccaa                tgcgtgcgcaccggagaagggcaacataagagggtcagacgcg
                  cttggaacattggtata                atggcacttattaaggatcaatgttagacagtaattgaatagt
                  ttcgttgaaccgagacg                tgtttctaagggtctgctaaagcccagtattgaatataaaata
                                                                                              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 543 ; UGA-SECIS: 750

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM003718.2:subseq_16452160,120548_ Strand = + Positions = 71092 - 71161
 Found by:  Infernal (score=30.79) Covels (score=23.09)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -16.7

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(((((((((--(...{[[{(((({(((({(.....---.......)}))))}))))}]]}..--.)-))))))))).
 target  UAAGUACACU--UUAGUGAAGACUACAUAGAAAACC---UCUGAGGUGUAUGAAGUCAGAUGU--CA-GGUGUGCUUU
                         ****           ^^^                       ****