_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-31
 Query name: gi|998702462|ref|XP_015488929.1| PREDICTED: redox-regulatory protein FAM213A isoform X2 [Parus major] >gi|998702464|ref|XP_015488930.1| PREDICTED: redox-regulatory protein FAM213A isoform X2 [Parus major]
 Query range: 1-224  (total 224)

 Target: /data/www-rg/seblastian_results/290514465/tempfiles/temptarget.fasta
 Chromosome: CM003716.2:subseq_17761084,103772_ Strand: -
 Positions:
 -Exon 1  53586        53763
 -Exon 2  53131        53222
 -Exon 3  51155        51295
 -Exon 4  50229        50393
 -Exon 5  50000        50095

 Redox box: YES

Query   MSFLPDLGAFTMGMWSVGLGAIGAAVTGIVLANTDLFLSKPEKATLEFLEEIELKTLGPE <---Intron---> QRTFKAGELWKENGAVIMAVRRPG
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   363bp    > ||||||||||||||||||||||||
Target  MSFLPDLGAFTMGMWSVGLGAIGAAVTGIVLANTDLFLSKPEKATLEFLEEIELKTLGPE                QRTFKAGELWKENGAVIMAVRRPG
        attccgtggtaagattggcggaggggagagcgaagttttacgagacgttggagcaatgcg                caatagggctagagggaaggcacg
        tcttcatgctctgtgctgtgctgcctcgtttcacatttcacaacctattaatatactgc                aagctacgatgaaagctttctggcg
        gccgtcggcccgcggttctacttatgagtcttctcatgcgaagcaggtaggagaatgaa                aagacaataagggttagcgtaaata
                                                                                                            

Query   UFLCRE <---Intron---> EASELSSLKPQLSKLGVPLYAVVKEKIGTEVEDFQHYFKGEIFLDEK <---Intron---> KGFYGPRRRKMMLSG
        |||||| <   1835bp   > ||||||||||||||||||||||||||||||||||||||||||||||| <   761bp    > |||||||||||||||
Target  UFLCRE                EASELSSLKPQLSKLGVPLYAVVKEKIGTEVEDFQHYFKGEIFLDEK                KGFYGPRRRKMMLSG
        ttttag                ggtgcttcaccctacggcctgggagaagaggggtccttaggatcgga                agttgccacaaattg
        gttgga                accatcctacatcatgtctacttaaatgcataataaatagatttaaa                agtagcgggatttcg
        atgcag                gttgcctgacggcggtctctttgaggagcaggttgttcaaactgtag                actttacagagggac
        *                                                                                                   

Query   FFRLGVWQNFFRAWRSGYSGNLEGEGFTLGGVYVIGAGRQ <---Intron---> GVLLEHREKEFGDKVSLPSVLEAAEKIKTQAS
        |||||||||||||||||||||||||||||||||||||||| <   133bp    > ||||||||||||||||||||||||||||||||
Target  FFRLGVWQNFFRAWRSGYSGNLEGEGFTLGGVYVIGAGRQ                GVLLEHREKEFGDKVSLPSVLEAAEKIKTQAS
        ttctggtcattcgtaagtagacggggtacgggtgagggac                ggtcgccgagtggagacctgcggggaaaacgt
        ttgtgtgaattgcggggaggatagagtctggtattgcgga                gtttaagaaatgaatgtccttaccaatacacc
        tccgatgatccttgatattatgaaaacggatatgtgaaag                ttaggttgaatacacctatctataggaaaata
                                                                                                
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 213 ; UGA-SECIS: 630

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM003716.2:subseq_17761084,103772_ Strand = - Positions = 49786 - 49720
 Found by:  Infernal (score=33.52) Covels (score=23.84)
 Stem2 length = 10   Apical loop length = 8   Insertion in stem2 = 0, 0
 Free Energy = -32.1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((......{[[{((((((((((.......---------.))))))))))}]]}..--...))))))))..
 target  UAUCUGACUGUAUUAAUGAAAGGCUGGGUCUAAAAUC---------UGACCUAGCCUAGAUGU--UUUCAGUCAGAGA
                         ****           ^^^                       ****