_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-23
 Query name: gi|1019056258|ref|XP_001514290.3| PREDICTED: selenoprotein T [Ornithorhynchus anatinus]
 Query range: 1-157  (total 157)

 Target: /data/www-rg/seblastian_results/833171576/tempfiles/temptarget.fasta
 Chromosome: CM003719.1:subseq_24728340,105072_ Strand: -
 Positions:
 -Exon 1  53719        53852
 -Exon 2  52527        52653
 -Exon 3  51197        51284
 -Exon 4  50000        50121

 Redox box: no

Query   MEIFEMVFVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR <---Intron---> HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQ
        / /  /  ||||||||||||||||||||||||||||||||||||| <   1065bp   > |||||||||||||||||||||||||||||||||||||||
Target  VTVLSVFSVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR                HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQ
        gagctgtagttgtacgtggtacgaacctcgacagggatccccata                cagttctgtacgtagtaaggagctgttgacgcaatctgc
        tcttcttgtcggaggttaaatgttgagacatgtagaaatcactag                atccttcttattttgttttgaactcttgtaccgtgagga
        gaggtgctccaccgggtggcggcccggcaccacaggctttattt                gcaaccgtccaaaatcacctcgcgttctcgataccgggcg
                  *                                                                                         

Query   ENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEITLND <---Intron---> VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSI
        ||| <   1242bp   > |||||||||||||||||||||||||||||| <   1075bp   > ||||||||||||||||||||||||||||||||/|/
Target  ENK                VYACMMVFFLSNMIENQCMSTGAFEITLND                VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMESM
        gaa                gtgtaagttcaaaagactataggtgaatag                gcgttacgtgccctacccgcacgagaacagcagta
        aaa                tacgttttttgattaaagtccgctatcta                atctgcatacgatcctaattattaaatatatatact
        acg                gcccggcccgccgtgcgtgctgttactgt                tcaggtgggtccctcgggtagcttcgggctgcggag
                                                                                                            

Query   PHHRS
        |||||
Target  PHHRS
        cccct
        caagc
        cttaa
             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1006 ; UGA-SECIS: 1444

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM003719.1:subseq_24728340,105072_ Strand = - Positions = 48993 - 48920
 Found by:  Infernal (score=33.58) Covels (score=39.75)
 Stem2 length = 12   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -25.1

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(((((((.--....{[[[((((((((((((....-........))))))))))))]]]}.....-.-.)))))))..
 target  GUGGUGCAGA--CCCAUGAAGGCCUGCACUGAAGAC-AGCCGCUGUUGGUGCAGGCUGGAUGCCUC-U-CUUGCAUCCA
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