_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-56
 Query name: gi|998719260|ref|XP_015497539.1| PREDICTED: glutathione peroxidase 3 [Parus major]
 Query range: 1-229  (total 229)

 Target: /data/www-rg/seblastian_results/696684273/tempfiles/temptarget.fasta
 Chromosome: CM003723.1:subseq_6268505,101019_ Strand: -
 Positions:
 -Exon 1  52043        52129
 -Exon 2  50863        51016
 -Exon 3  50522        50639
 -Exon 4  50288        50387
 -Exon 5  49970        50197

 Redox box: no

Query   MGGCSRSNWILPLFLAGLVQLGRSEEREK <---Intron---> VDCYHSVKDTIYSYGALTLDGDEYIPFERYKGKTVLFVNVATYUGLTLQYVE <-
        ||||||||||||||||||||||||||||| <   1026bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MGGCSRSNWILPLFLAGLVQLGRSEEREK                VDCYHSVKDTIYSYGALTLDGDEYIPFERYKGKTVLFVNVATYUGLTLQYVE   
        aggttcaatatccttggcgccgcaggaga                ggttctgagaatatggcacggggtactgatagaagctgaggattgcacctgg   
        tgggcggagttctttcgttatgggaagaa                tagaactaactagagctctagaaatctagaagacttttatccaggtctaat    
        ggccccccgtgctcgtgccgggatggggg                gccccgggccccccgcgcctgcgctctggcgggagccccacacacggggtt    
                                                                                                *           

Query   --Intron---> LNALQDELRSQGVVVLGFPSNQFGKQEPGQNSEILPALK <---Intron---> YVRPGGGFVPNFQLFQKGDVNGAKEQKIFTFL
          223bp    > ||||||||||||||||||||||||||||||||||||||| <   134bp    > ||||||||||||||||||||||||||||||||
Target               LNALQDELRSQGVVVLGFPSNQFGKQEPGQNSEILPALK                YVRPGGGFVPNFQLFQKGDVNGAKEQKIFTFL
                     cagccggcaacggggcgtctactgacgcgcatgaccgca                tgccgggtgcatcctcagggaggagcaatatc
                    atactaaatggagttttgtccaatgaaacgaacattccta                atgcgggttcatattaagatagcaaaattctt
                    agtaaatggacgatgctcctccatgggatcgcagcctgt                gtcgaatcttcccggcgagtgcgcggggccccg
                                                                                                            

Query   K <---Intron---> NACPPVAEEFGNPNKLFWEPLRNHDIKWNFEKFLVSPEGVPIMRWYHRTNISVVKNDIISYLRRRQQENHDEQQEQ
        | <    90bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  K                NACPPVAEEFGNPNKLFWEPLRNHDIKWNFEKFLVSPEGVPIMRWYHRTNISVVKNDIISYLRRRQQENHDEQQEQ
        a                agtccggggtgacaacttgcccacgaatatgatcgacgggcaacttccaaatggaagaattcaccccgacggccgc
        a                acgcctcaatgacaattgactgaaatagataatttgcagtcttggaagcatcttaaattcatgggaaaaaaaaaaa
        g                cctcgggggtgcccgccggtggctccggctggcggctgcgccgcgctcccccgggtcctccggggggacttagggg
                                                                                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 302 ; UGA-SECIS: 770

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM003723.1:subseq_6268505,101019_ Strand = - Positions = 49667 - 49575
 Found by:  Infernal (score=20.61) Covels (score=27.76)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -21.12

         ..(((((((...................(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg------------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..((((({(...................{[[((((({((((((.................))))))})))))]]}......-...)})))))..
 target  GUCUCUGGAGCAGGAGACCACAUCUCCAUGAAGGCUCGGCCCGAAAGCCCCCGGCUGGGGCGGGCCUGGCCUGACCGUGCC-GAGUGCGGAGCA
                                     ****           ^^^                         ****