------- SECIS element -- id:1 -- grade:A ---- Chromosome = KQ745070.1:subseq_797538,44002_ Strand = + Positions = 24429 - 24508 Found by: Infernal (score=28.51) Covels (score=37.3) Stem2 length = 11 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -15.65 ..(((((((.......(((((((((((((((...............)))))))))))))))...........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc ((((((({(.......{[[((({(((((((((.............)))))))))})))]]}.......-...)}))))))) target GCAUGAACGAAAUGAAUGAUGGCCUGUACUGAAGACAGCAAGCUGUUGGUACAGACUGGAUGCUCUCC-UCGCCUUCAUGU **** **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = KQ745070.1:subseq_797538,44002_ Strand = + Positions = 18545 - 18610 Found by: Infernal (score=11.91) Covels (score=2.57) Stem2 length = 9 Apical loop length = 8 Insertion in stem2 = 1, 0 Free Energy = -10.2 ..(((((((.......((((((((((.((.(((...............))))).))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gc-ccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc ...((({((((.....{[[((((((({--.(((.....--.-----..)))--})))))))]]}----..))))})))... target UUAAAAAACACUCUCAUGAGGAACAGC--AGCUGAAAU--U-----GGAGC--ACUGUUUUGAU----UUGUGUAUUUCUG **** ^^^ ****