Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q eEFsec127_anole -t eEFsec127extraccio.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000232_2.0 # Protein # Eukaryotic elongation factor (eEFsec) # Anole lizard 
        Target: KQ757173.1:subseq(1162302,34755) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold69, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 735
   Query range: 0 -> 168
  Target range: 24755 -> 9999

     1 : SerAspCysIleLeuPhePheLeuThrGlyAlaGlnIleIleAspLeuMetMetLeuVal :    20
         :!!|||      :::|||      :::|||||||||||||||||||||||||||||||||
         AlaAspPheArgValPheSerProSerGlyAlaGlnIleIleAspLeuMetMetLeuVal
 24755 : GCTGattttagggttttttccccctcaggtGCCCAGATAATTGACCTGATGATGCTTGTG : 24698

    21 : IleAspValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIle :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         IleAspValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIle
 24697 : ATAGATGTAACAAAGGGGATGCAGACTCAGTCAGCGGAGTGTTTGGTTATTGGGCAGATT : 24638

    41 : AlaCysGlnLysMetIleValValLeuAsnLysIleAspLeuLeuProGluSerLysArg :    60
         |||||||||||||||||||||||||||||||||||||||||||||||||||..!||||||
         AlaCysGlnLysMetIleValValLeuAsnLysIleAspLeuLeuProGluGluLysArg
 24637 : GCTTGCCAGAAGATGATAGTGGTTTTGAACAAAATCGACCTTCTTCCAGAGGAGAAGCGA : 24578

    61 : GlnAlaAlaIleGluLysMetThrLysLysMetGlnLysThrLeuGluAsnThr{Ly}   :    79
         ||||||! !:!!||||||||||||||||||||||||||||||||||||||||||{||}  
         GlnAlaAspValGluLysMetThrLysLysMetGlnLysThrLeuGluAsnThr{Ly}++
 24577 : CAGGCTGATGTTGAGAAAATgacaaagaaaatgcagaagacctTGGAAAACACC{AA}gt : 24519

    80 : >>>> Target Intron 1 >>>>  {s}PheHisGluCysProIleValSerValSer :    89
                  10925 bp          {|}||||||! !||||||||||||:!!|||:!!
                                  ++{s}PheHisGlyCysProIleValAlaValAla
 24518 : .........................ag{A}TTCCATGGATGTCCTATAGTTGCAGTTGCA : 13566

    90 : AlaLysProGlyGlyProGluAlaProGluThrValValProValGlyValSerGluLeu :   109
         |||||||||||||||||||||||| !!|||||||||..!|||:!!|||||||||||||||
         AlaLysProGlyGlyProGluAlaSerGluThrValThrProIleGlyValSerGluLeu
 13565 : GCAAAGCCTGGTGGACCTGAAGCCTCTGAAACCGTGACACCGATAGGAGTTTCTGAGCTA : 13506

   110 : IleGlu  >>>> Target Intron 2 >>>>  ValLeuLysAlaGluAlaTyrLeuP :   120
         ||||||           3327 bp           |||||||||:!!|||||||||||||
         IleGlu++                         ++ValLeuLysSerGluAlaTyrLeuP
 13505 : ATTGAGgt.........................agGTCCTGAAGTCAGAGGCTTACCTAC : 10146

   121 : roLysArgAspProSerGlyProPheLeuMetAlaIleAspHisCysPheSerIleLysG :   140
         |||||||||||||||||||| !!||||||||||||:!!||||||||||||||||||||||
         roLysArgAspProSerGlySerPheLeuMetAlaValAspHisCysPheSerIleLysG
 10145 : CAAAAAGAGATCCCTCAGGATCTTTCCTTATGGCTGTTGACCACTGTTTCTCCATTAAGG : 10086

   141 : lyGlnGlyThrValMetThrGlyThrIleLeuSerGlySerValSerValGlyAspAsnV :   160
         ||||||||||||||||||||||||||||||||||||||!!!||||||:!!||||||||||
         lyGlnGlyThrValMetThrGlyThrIleLeuSerGlyCysValSerIleGlyAspAsnV
 10085 : GTCAAGGCACTGTGATGACAGGAACTATTCTTTCAGGCTGTGTTAGCATTGGAGACAATG : 10026

   161 : alGluIleProAlaLeuLysValSer :   168
         ||||||||||||||||||||||||||
         alGluIleProAlaLeuLysValSer
 10025 : TGGAGATTCCTGCCCTGAAGGTGAGT : 10000

vulgar: SPP00000232_2.0 0 168 . KQ757173.1:subseq(1162302,34755) 24755 9999 - 735 M 78 234 S 0 2 5 0 2 I 0 10921 3 0 2 S 1 1 M 32 96 5 0 2 I 0 3323 3 0 2 M 57 171
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-02
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	gene	10000	24755	735	-	.	gene_id 1 ; sequence SPP00000232_2.0 ; gene_orientation +
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	cds	24520	24755	.	-	.	
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	exon	24520	24755	.	-	.	insertions 0 ; deletions 0
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	splice5	24518	24519	.	-	.	intron_id 1 ; splice_site "GT"
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	intron	13595	24519	.	-	.	intron_id 1
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	splice3	13595	13596	.	-	.	intron_id 0 ; splice_site "AG"
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	cds	13498	13594	.	-	.	
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	exon	13498	13594	.	-	.	insertions 0 ; deletions 0
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	splice5	13496	13497	.	-	.	intron_id 2 ; splice_site "GT"
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	intron	10171	13497	.	-	.	intron_id 2
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	splice3	10171	10172	.	-	.	intron_id 1 ; splice_site "AG"
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	cds	10000	10170	.	-	.	
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	exon	10000	10170	.	-	.	insertions 0 ; deletions 0
KQ757173.1:subseq(1162302,34755)	exonerate:protein2genome:local	similarity	10000	24755	735	-	.	alignment_id 1 ; Query SPP00000232_2.0 ; Align 24756 1 234 ; Align 13594 80 96 ; Align 10171 112 171
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis