Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q eEFsec126.anole.fa -t eEFsec126.extraccio.KQ757173.1.fa] Hostname: [ws101066u] C4 Alignment: ------------ Query: eEFsec126 Target: KQ757173.1:subseq(1176821,20236) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold69, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 337 Query range: 0 -> 79 Target range: 10236 -> 1639 1 : SerAspCysIleLeuPhePheLeuThrGlyAlaGlnIleIleAspLeuMetMetLeuVal : 20 :!!||| :::||| :::||||||||||||||||||||||||||||||||| AlaAspPheArgValPheSerProSerGlyAlaGlnIleIleAspLeuMetMetLeuVal 10236 : GCTGattttagggttttttccccctcaggtGCCCAGATAATTGACCTGATGATGCTTGTG : 10179 21 : IleAspValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIle : 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| IleAspValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIle 10178 : ATAGATGTAACAAAGGGGATGCAGACTCAGTCAGCGGAGTGTTTGGTTATTGGGCAGATT : 10119 41 : AlaCysGlnLysMetIleValValLeuAsnLysIleAspLeuLeuProGluSerLysArg : 60 |||||||||||||||||||||||||||||||||||||||||||||||||||..!|||||| AlaCysGlnLysMetIleValValLeuAsnLysIleAspLeuLeuProGluGluLysArg 10118 : GCTTGCCAGAAGATGATAGTGGTTTTGAACAAAATCGACCTTCTTCCAGAGGAGAAGCGA : 10059 61 : GlnAlaAlaIleGluLysMetThrLysLysMetGlnLysThrLeuGluAsnThr{Ly} : 79 ||||||! !:!!||||||||||||||||||||||||||||||||||||||||||{||} GlnAlaAspValGluLysMetThrLysLysMetGlnLysThrLeuGluAsnThr{Ly}++ 10058 : CAGGCTGATGTTGAGAAAATgacaaagaaaatgcagaagacctTGGAAAACACC{AA}gt : 10000 80 : >>>> Target Intron 1 >>>> {s} : 79 8360 bp {|} ++{s} 9999 : .........................ag{G} : 1640 vulgar: eEFsec126 0 79 . KQ757173.1:subseq(1176821,20236) 10236 1639 - 337 M 78 234 S 0 2 5 0 2 I 0 8356 3 0 2 S 1 1 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-09 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ757173.1:subseq(1176821,20236) exonerate:protein2genome:local gene 1640 10236 337 - . gene_id 1 ; sequence eEFsec126 ; gene_orientation + KQ757173.1:subseq(1176821,20236) exonerate:protein2genome:local cds 10001 10236 . - . KQ757173.1:subseq(1176821,20236) exonerate:protein2genome:local exon 10001 10236 . - . insertions 0 ; deletions 0 KQ757173.1:subseq(1176821,20236) exonerate:protein2genome:local splice5 9999 10000 . - . intron_id 1 ; splice_site "GT" KQ757173.1:subseq(1176821,20236) exonerate:protein2genome:local intron 1641 10000 . - . intron_id 1 KQ757173.1:subseq(1176821,20236) exonerate:protein2genome:local splice3 1641 1642 . - . intron_id 0 ; splice_site "AG" KQ757173.1:subseq(1176821,20236) exonerate:protein2genome:local utr3b 1640 1640 . - . KQ757173.1:subseq(1176821,20236) exonerate:protein2genome:local exon 1640 1640 . - . insertions 0 ; deletions 0 KQ757173.1:subseq(1176821,20236) exonerate:protein2genome:local similarity 1640 10236 337 - . alignment_id 1 ; Query eEFsec126 ; Align 10237 1 234 # --- END OF GFF DUMP --- # -- completed exonerate analysis