Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q TXNRD3.anole.fa -t TXNRD3.extraccio.KQ746720.1.fa] Hostname: [ws112181u] C4 Alignment: ------------ Query: TXNRD3.Anole Target: KQ746720.1:subseq(2251229,59894) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold12, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 2582 Query range: 11 -> 609 Target range: 54494 -> 19999 12 : AspTrpAspAlaLeuLysLeuArgValArg{S} >>>> Target Intron 1 >>>> : 22 |||||||||!.!!!!!:!! !!:!..!! !{|} 2000 bp AspTrpAspValPheArgGlnLysThrThr{S}++ 54494 : GATTGGGACGTTTTCAGGCAGAAGACTACA{A}gt......................... : 54461 23 : {er}MetVal >>>> Target Intron 2 >>>> ThrSerHisArgValMetI : 31 {||}|||||| 1156 bp ...||| -+{er}MetVal++ ++GluAspHisAlaTrpSerG 54460 : tg{gt}atggtggt.........................aggaggatcacgcttggtctg : 51281 32 : lePheSerLysThrTyrCysProPhe{Cy} >>>> Target Intron 3 >>>> { : 40 |||||| ... |||||| {||} 4653 bp { luPheSerAlaValAlaCysProSer{Cy}+- ++{ 51280 : agttctctgctgtggcctgtccgtct{tg}gg.........................ag{ : 46599 41 : s}ArgLys >>>> Target Intron 4 >>>> ValLysAspLeuPheHisSerMe : 50 |}!:!:!! 6698 bp ||||||!!:||||||||||||:! s}LysGln++ ++ValLysGluLeuPheHisSerLe 46598 : T}AAACAGgt.........................aggTAAAAGAACTCTTTCATTCTTT : 39873 51 : tSerValGluTyrSerAlaLeuGluLeuAspLysThr{A} >>>> Target Intron : 63 !.!!||||||||||||||||||||||||||||||! !{|} 3718 bp uGlyValGluTyrSerAlaLeuGluLeuAspLysIle{A}++ 39872 : GGGAGTAGAATATAGTGCTTTGGAGCTTGACAAGATA{G}gt.................. : 39831 64 : 5 >>>> {sp}GluGlyProSerIleGlnGluValLeuLeuGluLeuThrGlyGlnAr : 79 {||}.!.|||||||||||||||!!:!.!||||||! !|||||||||||||| ++{sp}AsnGlyProSerIleGlnAspAlaLeuLeuGlyLeuThrGlyGlnAr 39830 : .......ag{AC}AATGGCCCCAGTATTCAGGATGCATTACTAGGACTAACAGGCCAGAG : 36068 80 : gThrValProAsnValPheValAsnGlyThrHisValGlyGlyCysAspGlnThrPheGl : 99 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| gThrValProAsnValPheValAsnGlyThrHisValGlyGlyCysAspGlnThrPheGl 36067 : GACTGTCCCTAATGTGTTTGTCAATGGAACTCATGTAGGCGGATGTGATCAGACTTTCCA : 36008 100 : n >>>> Target Intron 6 >>>> AlaTyrGlnSerGlyLeuLeuGlnSerLeu : 109 | 1619 bp |||||||||!!!||||||||||||!!!||| n++ ++AlaTyrGlnThrGlyLeuLeuGlnArgLeu 36007 : Ggt.........................agGCTTACCAAACTGGCTTATTGCAGAGGCTT : 34359 110 : LeuGlyAspGlyLysGlyGluGluMetGluSerPheAspTyrAspLeuIleIleIleGly : 129 ||||||||| !|||..!|||:!!||||||..!!:!|||||||||||||||:!!|||||| LeuGlyAspThrLysAsnGluGlnMetGluAspTyrAspTyrAspLeuIleValIleGly 34358 : TTAGGGGATACCAAAAATGAACAGATGGAAGACTATGATTATGACCTCATTGTTATTGGT : 34299 130 : GlyGlySerGlyGlyLeuAlaCysSerLys >>>> Target Intron 7 >>>> G : 140 ||||||||||||||||||:!!||||||||| 1688 bp | GlyGlySerGlyGlyLeuSerCysSerLys++ ++G 34298 : GGAGGATCCGGTGGGCTTTCATGTTCCAAGgt.........................agG : 32578 141 : luAlaAlaThrLeuGlyLysLysValMetValLeuAspTyrValValProThrProIleG : 160 ||||||||..!||||||!:!||||||||||||||||||||||||||||||||||||!!:| luAlaAlaValLeuGlyArgLysValMetValLeuAspTyrValValProThrProMetG 32577 : AAGCTGCGGTGTTAGGAAGGAAGGTCATGGTGCTAGATTATGTTGTACCAACACCCATGG : 32518 161 : lyThrThrTrp{G} >>>> Target Intron 8 >>>> {ly}LeuGlyGlyThrC : 169 |||||||||||{|} 1272 bp {||}||||||||||||| lyThrThrTrp{G}++ ++{ly}LeuGlyGlyThrC 32517 : GTACTACATGG{G}gt.........................ag{GA}CTTGGTGGCACAT : 31219 170 : ysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnA : 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnA 31218 : GTGTAAATGTGGGCTGCATTCCTAAGAAGCTGATGCATCAGGCTGCCCTTTTAGGCCAGG : 31159 190 : laLeuGlnAspSerArgLysPheGlyTrpGluTyrAspGluGln{V} >>>> Target : 204 |||||||||||||||||||||||||||||||||||!!:||||||{|} 5 laLeuGlnAspSerArgLysPheGlyTrpGluTyrGluGluGln{V}++ 31158 : CTCTTCAAGATTCAAGGAAGTTTGGTTGGGAGTACGAAGAGCAA{G}gt........... : 31111 205 : Intron 9 >>>> {al}LysHisAsnTrpGluThrMetValGluAlaIleGlnAsnT : 218 57 bp {||}|||||||||||||||||||||||||||||||||||||||| ++{al}LysHisAsnTrpGluThrMetValGluAlaIleGlnAsnT 31110 : ..............ag{TA}AAACACAATTGGGAGACCATGGTAGAAGCGATTCAGAACT : 30515 219 : yrIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysThrValThrTyrL : 238 |||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||| yrIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysSerValThrTyrL 30514 : ACATAGGATCCTTGAACTGGGGATATCGGGTGGCCTTGCGTGAGAAATCTGTGACATACC : 30455 239 : euAsnAlaTyrGlyGluPheValGlyProHisLysIleLys >>>> Target Intro : 252 ||||||||||||||||||||||||||||||||||||||||| 1968 bp euAsnAlaTyrGlyGluPheValGlyProHisLysIleLys++ 30454 : TCAATGCATATGGAGAGTTCGTTGGGCCACATAAGATCAAGgt................. : 30411 253 : n 10 >>>> AlaThrAsnArgLysGlyGlnGluThrPheTyrThrAlaGlnThrTyrV : 268 ||||||||||||||||||||||||||||||:!!|||||||||.!!!:!| ++AlaThrAsnArgLysGlyGlnGluThrPheHisThrAlaGlnAlaPheV 30410 : .........agGCAACGAACAGGAAAGGCCAAGAAACTTTCCACACAGCTCAAGCGTTTG : 28397 269 : alIleAlaThrGlyGluArgProArgTyrLeuGlyIleProGlyAspLysGluTyrCysI : 288 |||||||||||||| !|||||||||||| !|||.!!|||||||||!:!|||||||||| alIleAlaThrGlyMetArgProArgTyrGluGlyPheProGlyAspArgGluTyrCysI 28396 : TTATAGCCACAGGGATGAGACCTCGATATGAAGGTTTCCCTGGAGATAGAGAATACTGTA : 28337 289 : leThr{Se} >>>> Target Intron 11 >>>> {r}AspAspLeuPheSerLeu : 296 |||||{||} 89 bp {|}|||||||||||||||||| leThr{Se}++ ++{r}AspAspLeuPheSerLeu 28336 : TTACA{AG}gt..........................ag{T}GATGACCTCTTCTCCCTG : 28224 297 : ProTyrCysProGlyLysThrLeuIleValGlyAlaSerTyrValAlaLeuGluCysAla : 316 ||||||||||||||||||||||||:!!||||||||||||||||||||||||||||||||| ProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGluCysAla 28223 : CCCTACTGTCCTGGAAAGACTTTAGTTGTGGGAGCTTCTTACGTGGCTTTGGAATGTGCA : 28164 317 : GlyPheLeuAlaGlyLeuGlyLeuAspValThrValMetValArgSerIleLeuLeuArg : 336 |||||||||||||||||||||:!!|||||||||||||||||||||||||||||||||||| GlyPheLeuAlaGlyLeuGlyMetAspValThrValMetValArgSerIleLeuLeuArg 28163 : GGATTTCTTGCTGGGCTTGGTATGGATGTCACAGTCATGGTGCGCTCTATCCTCCTACGT : 28104 337 : GlyPheAspGlnGluMetAlaGluArgAlaGlyAlaTyrMetGluThrHisGlyValLys : 356 |||||||||||||||||||||||||||!.!|||||||||||||||||||||||||||||| GlyPheAspGlnGluMetAlaGluArgValGlyAlaTyrMetGluThrHisGlyValLys 28103 : GGCTTTGACCAAGAAATGGCAGAGAGAGTGGGTGCATATATGGAAACTCATGGTGTAAAA : 28044 357 : PheIleArgLysPheValProIleGlu >>>> Target Intron 12 >>>> Val : 366 |||||||||||||||||||||:!!||| 647 bp ||| PheIleArgLysPheValProValGlu+- ++Val 28043 : TTCATCAGGAAGTTTGTTCCTGTTGAGgc..........................agGTC : 27367 367 : IleLysLeuGluAspGlyMetProGlyArgLeuLysValValAlaGlnSerThrValGly : 386 ! !||||||||||||||||||||||||||||||||||||:!!|||:!!||||||! !||| ThrLysLeuGluAspGlyMetProGlyArgLeuLysValIleAlaLysSerThrAspGly 27366 : ACAAAGTTAGAAGATGGCATGCCTGGAAGACTCAAAGTGATTGCAAAATCCACTGATGGA : 27307 387 : ProAspMetIleGluGlyGluTyrAsnThr >>>> Target Intron 13 >>>> : 397 !!.!.|||.!!|||||||||||||||||| 323 bp SerGlnMetPheGluGlyGluTyrAsnThr++ ++ 27306 : TCACAGATGTTTGAAGGAGAATACAACACTgt..........................ag : 26953 398 : ValLeuIleAlaValGlyArgAspAlaCysThrArgAsnIleGlyLeuAspLysIleGly : 416 ||||||||||||:!!||||||||||||||||||!:!||||||||||||!!:||||||||| ValLeuIleAlaIleGlyArgAspAlaCysThrLysAsnIleGlyLeuGluLysIleGly 26952 : GTTTTGATAGCTATCGGTCGCGATGCTTGTACCAAAAACATTGGCTTGGAGAAAATTGGT : 26894 417 : ValAsnIleAsnAla{Me} >>>> Target Intron 14 >>>> {t}AsnGlyLy : 425 |||!..||||||! !{! } 2346 bp {!}|||||||| ValThrIleAsnGlu{Ly}++ ++{s}AsnGlyLy 26893 : GTGACAATTAATGAA{AA}gt..........................ag{G}AATGGAAA : 24521 426 : sIleProValSerAspGluGluGlnThrAsnValProTyrValTyrAlaValGlyAspVa : 445 ||||||||||!:!|||||||||||||||||||||||||||||||||||||||||||||:! sIleProValAsnAspGluGluGlnThrAsnValProTyrValTyrAlaValGlyAspIl 24520 : AATACCTGTAAATGATGAAGAACAAACCAATGTGCCTTATGTTTATGCTGTTGGAGATAT : 24461 446 : lLeuGluGlyLysLeuGluLeuThrProValAlaIleGlnAlaGlyLysLeuLeuAlaAr : 465 !|||||||||||||||||||||||||||:!!||||||||||||||||||||||||||||| eLeuGluGlyLysLeuGluLeuThrProLeuAlaIleGlnAlaGlyLysLeuLeuAlaAr 24460 : TTTGGAAGGAAAGCTGGAACTTACACCACTTGCCATACAGGCAGGCAAACTGTTAGCCCG : 24401 466 : gArgLeuPheGlyGlySerSerThrLys >>>> Target Intron 15 >>>> Cy : 475 ||||||||||||||||!:!||||||||| 535 bp || gArgLeuPheGlyGlyAsnSerThrLys++ ++Cy 24400 : CAGGCTTTTTGGAGGGAATTCTACAAAGgt..........................agTG : 23836 476 : sAspTyrIleAsnValSerThrThrValPheThrProLeuGluTyrGlyCysCysGlyLe : 495 |||||||||||||||| !!||||||||||||||||||||||||||||||||||||||||| sAspTyrIleAsnValProThrThrValPheThrProLeuGluTyrGlyCysCysGlyLe 23835 : TGACTATATTAATGTGCCAACTACAGTGTTTACACCTCTGGAATATGGCTGCTGTGGATT : 23776 496 : uProGluGluGlnAlaIleGluGlnLeuGlyGlnGluAsnValGlu >>>> Target : 511 | !!||||||::!|||||||||||||||||||||||||||:!!||| 22 uSerGluGluArgAlaIleGluGlnLeuGlyGlnGluAsnIleGlu+- 23775 : ATCAGAAGAGAGAGCCATTGAACAACTTGGACAGGAGAATATAGAGgc............ : 23726 512 : Intron 16 >>>> ValTyrHisAsnLeuPheTrpProLeuGluTrpThrIleProAs : 525 49 bp |||||||||!..|||||||||||||||||||||||||||||| ++ValTyrHisThrLeuPheTrpProLeuGluTrpThrIleProAl 23725 : ..............agGTGTATCACACACTTTTCTGGCCACTTGAGTGGACGATACCTGC : 21437 526 : nArgAspAsnAsnThrCysTyrAlaLysValIleCysAsnLysLeuAspAsn >>>> T : 543 !||||||||||||||||||||||||||||||:!!||||||||||||||| ! aArgAspAsnAsnThrCysTyrAlaLysValValCysAsnLysLeuAspCys++ 21436 : TAGAGACAACAACACTTGCTATGCAAAAGTAGTCTGCAATAAGCTTGACTGTgt...... : 21381 544 : arget Intron 17 >>>> AsnArgValIleGlyLeuHisValLeuGlyProAsnAl : 555 788 bp |||||||||||||||!!!|||||||||||||||||||| ++AsnArgValIleGlyPheHisValLeuGlyProAsnAl 21380 : ....................agAACCGTGTGATAGGATTTCATGTTCTTGGACCTAATGC : 20559 556 : aGlyGluIleThrGlnGlyPheGlyAlaAlaMetLysCysGlyIleThrLysAlaIleLe : 575 |||||||||||||||||||||||||||||||!!:||||||||||||||||||! !:!:|| aGlyGluIleThrGlnGlyPheGlyAlaAlaIleLysCysGlyIleThrLysGluLeuLe 20558 : TGGAGAAATTACTCAAGGCTTTGGAGCTGCAATAAAATGTGGCATCACCAAGGAATTGCT : 20499 576 : uAspGluThrIleGlyIleHisProThrCysAlaGlu >>>> Target Intron 18 : 588 ||||||||||||||||||||||||||||||||||||| 395 bp uAspGluThrIleGlyIleHisProThrCysAlaGlu++ 20498 : TGATGAAACAATTGGTATACATCCAACATGTGCAGAGgt..................... : 20458 589 : >>>> ValPheThrThrMetAspIleThrArgAlaSerGluLysAspIleAlaGlnSe : 605 ||||||||||||||||||||||||!:!||||||! !:!!|||||| !|||:! ++ValPheThrThrMetAspIleThrLysAlaSerGlyGlnAspIleAsnGlnAl 20457 : .....agGTGTTCACAACAATGGACATTACAAAGGCTTCAGGGCAAGATATCAATCAGGC : 20014 606 : rGlyCysUnkGly : 609 !|||||| ||| aGlyCys***Gly 20013 : TGGCTGCTGAGGT : 20000 vulgar: TXNRD3.Anole 11 609 . KQ746720.1:subseq(2251229,59894) 54494 19999 - 2582 M 10 30 S 0 1 5 0 2 I 0 1996 3 0 2 S 1 2 M 2 6 5 0 2 I 0 1152 3 0 2 M 15 45 S 0 2 5 0 2 I 0 4649 3 0 2 S 1 1 M 2 6 5 0 2 I 0 6694 3 0 2 M 20 60 S 0 1 5 0 2 I 0 3714 3 0 2 S 1 2 M 36 108 5 0 2 I 0 1615 3 0 2 M 40 120 5 0 2 I 0 1684 3 0 2 M 24 72 S 0 1 5 0 2 I 0 1268 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 553 3 0 2 S 1 2 M 47 141 5 0 2 I 0 1964 3 0 2 M 38 114 S 0 2 5 0 2 I 0 85 3 0 2 S 1 1 M 75 225 5 0 2 I 0 643 3 0 2 M 31 93 5 0 2 I 0 319 3 0 2 M 25 75 S 0 2 5 0 2 I 0 2342 3 0 2 S 1 1 M 52 156 5 0 2 I 0 531 3 0 2 M 36 108 5 0 2 I 0 2245 3 0 2 M 32 96 5 0 2 I 0 784 3 0 2 M 45 135 5 0 2 I 0 391 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-11 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local gene 20000 54494 2582 - . gene_id 1 ; sequence TXNRD3.Anole ; gene_orientation + KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 54464 54494 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 54464 54494 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 54462 54463 . - . intron_id 1 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 52464 54463 . - . intron_id 1 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 52464 52465 . - . intron_id 0 ; splice_site "tg" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 52456 52463 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 52456 52463 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 52454 52455 . - . intron_id 2 ; splice_site "gt" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 51300 52455 . - . intron_id 2 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 51300 51301 . - . intron_id 1 ; splice_site "ag" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 51253 51299 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 51253 51299 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 51251 51252 . - . intron_id 3 ; splice_site "gg" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 46600 51252 . - . intron_id 3 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 46600 46601 . - . intron_id 2 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 46593 46599 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 46593 46599 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 46591 46592 . - . intron_id 4 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 39895 46592 . - . intron_id 4 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 39895 39896 . - . intron_id 3 ; splice_site "ag" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 39834 39894 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 39834 39894 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 39832 39833 . - . intron_id 5 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 36116 39833 . - . intron_id 5 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 36116 36117 . - . intron_id 4 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 36006 36115 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 36006 36115 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 36004 36005 . - . intron_id 6 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 34387 36005 . - . intron_id 6 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 34387 34388 . - . intron_id 5 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 34267 34386 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 34267 34386 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 34265 34266 . - . intron_id 7 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 32579 34266 . - . intron_id 7 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 32579 32580 . - . intron_id 6 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 32506 32578 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 32506 32578 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 32504 32505 . - . intron_id 8 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 31234 32505 . - . intron_id 8 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 31234 31235 . - . intron_id 7 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 31114 31233 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 31114 31233 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 31112 31113 . - . intron_id 9 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 30557 31113 . - . intron_id 9 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 30557 30558 . - . intron_id 8 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 30414 30556 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 30414 30556 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 30412 30413 . - . intron_id 10 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 28446 30413 . - . intron_id 10 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 28446 28447 . - . intron_id 9 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 28330 28445 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 28330 28445 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 28328 28329 . - . intron_id 11 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 28241 28329 . - . intron_id 11 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 28241 28242 . - . intron_id 10 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 28015 28240 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 28015 28240 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 28013 28014 . - . intron_id 12 ; splice_site "GC" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 27368 28014 . - . intron_id 12 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 27368 27369 . - . intron_id 11 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 27275 27367 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 27275 27367 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 27273 27274 . - . intron_id 13 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 26952 27274 . - . intron_id 13 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 26952 26953 . - . intron_id 12 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 26875 26951 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 26875 26951 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 26873 26874 . - . intron_id 14 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 24529 26874 . - . intron_id 14 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 24529 24530 . - . intron_id 13 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 24372 24528 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 24372 24528 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 24370 24371 . - . intron_id 15 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 23837 24371 . - . intron_id 15 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 23837 23838 . - . intron_id 14 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 23729 23836 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 23729 23836 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 23727 23728 . - . intron_id 16 ; splice_site "GC" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 21480 23728 . - . intron_id 16 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 21480 21481 . - . intron_id 15 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 21384 21479 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 21384 21479 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 21382 21383 . - . intron_id 17 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 20596 21383 . - . intron_id 17 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 20596 20597 . - . intron_id 16 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 20461 20595 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 20461 20595 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 20459 20460 . - . intron_id 18 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 20066 20460 . - . intron_id 18 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 20066 20067 . - . intron_id 17 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 20000 20065 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 20000 20065 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local similarity 20000 54494 2582 - . alignment_id 1 ; Query TXNRD3.Anole ; Align 54495 12 30 ; Align 52462 23 6 ; Align 51300 25 45 ; Align 46599 41 6 ; Align 39895 43 60 ; Align 36114 64 108 ; Align 34387 100 120 ; Align 32579 140 72 ; Align 31232 165 117 ; Align 30555 205 141 ; Align 28446 252 114 ; Align 28240 291 225 ; Align 27368 366 93 ; Align 26952 397 75 ; Align 24528 423 156 ; Align 23837 475 108 ; Align 21480 511 96 ; Align 20596 543 135 ; Align 20066 588 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: TXNRD3.Anole Target: KQ746720.1:subseq(2251229,59894) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold12, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 73 -> 210 Target range: 55461 -> 7015 74 : GluLeuThrGlyGlnArgThrValProAsnValPheValAsnGlyThrHisVal >>>> : 92 |||! !! !||||||!.! ! !||| !||||||||| ! !! :!! GluGlnArgGlyGlnAsnGlnAsnProValLysPheValAsnThrLeuLeuLeu++ 55461 : GAGCAAAGGGGACAAAATCAGAACCCTGTGAAATTTGTTAACACACTACTACTGgt.... : 55405 93 : Target Intron 1 >>>> GlyGlyCysAspGlnThrPheGln >>>> Target : 100 14417 bp ||| ......||| 54 ++GlyThrIleValAlaAsnLeuGln++ 55404 : .....................agggaactattgttgccaatctccaggt........... : 40964 101 : Intron 2 >>>> AlaTyrGlnSerGlyLeuLeuGlnSerLeuLeuGlyAspGlyLy : 114 81 bp !.!|||!!.!:!||||||! !|||!!!|||:!!|||||||||!! ++ValTyrHisAsnGlyLeuSerGlnArgLeuIleGlyAspGlyAs 40963 : ..............agGTTTACCATAACGGCTTATCGCAGAGGCTTATAGGGGATGGGAA : 35443 115 : sGlyGluGluMetGluSerPheAspTyrAspLeuIleIleIleGlyGlyGlySer >>> : 133 ...!:!!! !!!:|||:!!!:!||||||!!:||||||:!!:!!||||||! !||| nAsnLysGlyIleGluAlaTyrAspTyrGluLeuIleValValGlyGlyValSer++ 35442 : CAATAAAGGGATCGAAGCCTATGATTATGAACTAATTGTTGTTGGCGGGGTATCTgt... : 35384 134 : > Target Intron 3 >>>> GlyGlyLeuAlaCysSerLysGluAlaAlaThrLeu : 144 5485 bp ||| |||......||| ||| ::: ++ThrGlyAlaAlaAlaLysLysAlaLeuAlaLeuVal 35383 : ......................agacaggagccgccgccaagaaagccctggccctggtt : 29868 145 : GlyLysLysValMetValLeu >>>> Target Intron 4 >>>> AspTyrValV : 155 ... ...:::||| ||| 3948 bp :::| AlaAlaAsnLeuMetSerLeu+- ++LysAlaLeuV 29867 : gcagccaacttgatgtccttggg.........................agaaagcattgg : 25887 156 : alProThrProIleGlyThrThrTrpGly >>>> Target Intron 5 >>>> Le : 165 ||||| !!||| !..! !!:!!!::||| 3323 bp alProProProSerSerProSerPheGly++ ++Gl 25886 : tccCACCTCCCTCCTCGCCCTCTTTTGGGgt.........................agGA : 22534 166 : uGlyGlyThrCysValAsnValGlyCysIleProLys{L} >>>> Target Intron : 178 !!.!|||||| !.!!.. !!|||||| |||!..{|} 2427 bp uAlaGlyThrProAlaArgPheGlyCysGluProSer{L}++ 22533 : GGCAGGGACACCAGCAAGGTTCGGCTGTGAGCCAAGC{A}gt.................. : 22492 179 : 6 >>>> {ys}LeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuGlnAspSerAr : 194 {||}:!!.!. ! !! !:!! ! ! :!! !||||||! !!. +-{ys}ValPheThrThrMetAspIleThrLysAlaSerGlyGlnAspIleAs 22491 : .......ac{AG}GTGTTCACAACAATGGACATTACAAAGGCTTCAGGGCAAGATATCAA : 20020 195 : gLysPheGly{Tr} >>>> Target Intron 7 >>>> {p}GluTyrAspGluGl : 203 !:!! !|||{||} 12125 bp {|}!!: ! ..! :! nGlnAlaGly{Tr}-+ ++{p}AspLysSerThrLy 20019 : TCAGGCTGGC{TG}ct.........................ag{G}GATAAATCTACTAA : 7868 204 : n{V} >>>> Target Intron 8 >>>> {al}LysHisAsnTrpGluThr : 210 !{!} 829 bp {.!}||||||::!|||...||| s{A}++ ++{la}LysHisSerTrpSerThr 7867 : A{G}gt.........................ag{CA}AAGCACTCTTGGAGCACT : 7016 vulgar: TXNRD3.Anole 73 210 . KQ746720.1:subseq(2251229,59894) 55461 7015 - 118 M 18 54 5 0 2 I 0 14413 3 0 2 M 8 24 5 0 2 I 0 5477 3 0 2 M 33 99 5 0 2 I 0 5481 3 0 2 M 19 57 5 0 2 I 0 3944 3 0 2 M 13 39 5 0 2 I 0 3319 3 0 2 M 13 39 S 0 1 5 0 2 I 0 2423 3 0 2 S 1 2 M 19 57 S 0 2 5 0 2 I 0 12121 3 0 2 S 1 1 M 5 15 S 0 1 5 0 2 I 0 825 3 0 2 S 1 2 M 6 18 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-11 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local gene 7016 55461 118 - . gene_id 2 ; sequence TXNRD3.Anole ; gene_orientation + KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 55408 55461 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 55408 55461 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 55406 55407 . - . intron_id 1 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 40991 55407 . - . intron_id 1 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 40991 40992 . - . intron_id 0 ; splice_site "ag" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 40967 40990 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 40967 40990 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 40965 40966 . - . intron_id 2 ; splice_site "gt" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 35486 40966 . - . intron_id 2 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 35486 35487 . - . intron_id 1 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 35387 35485 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 35387 35485 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 35385 35386 . - . intron_id 3 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 29902 35386 . - . intron_id 3 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 29902 29903 . - . intron_id 2 ; splice_site "ag" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 29845 29901 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 29845 29901 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 29843 29844 . - . intron_id 4 ; splice_site "gg" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 25897 29844 . - . intron_id 4 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 25897 25898 . - . intron_id 3 ; splice_site "ag" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 25858 25896 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 25858 25896 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 25856 25857 . - . intron_id 5 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 22535 25857 . - . intron_id 5 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 22535 22536 . - . intron_id 4 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 22495 22534 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 22495 22534 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 22493 22494 . - . intron_id 6 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 20068 22494 . - . intron_id 6 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 20068 20069 . - . intron_id 5 ; splice_site "AC" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 20007 20067 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 20007 20067 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 20005 20006 . - . intron_id 7 ; splice_site "CT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 7882 20006 . - . intron_id 7 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 7882 7883 . - . intron_id 6 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 7865 7881 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 7865 7881 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice5 7863 7864 . - . intron_id 8 ; splice_site "GT" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local intron 7036 7864 . - . intron_id 8 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local splice3 7036 7037 . - . intron_id 7 ; splice_site "AG" KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local cds 7016 7035 . - . KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local exon 7016 7035 . - . insertions 0 ; deletions 0 KQ746720.1:subseq(2251229,59894) exonerate:protein2genome:local similarity 7016 55461 118 - . alignment_id 2 ; Query TXNRD3.Anole ; Align 55462 74 54 ; Align 40991 92 24 ; Align 35486 100 99 ; Align 29902 133 57 ; Align 25897 152 39 ; Align 22535 165 39 ; Align 20066 179 57 ; Align 7881 199 15 ; Align 7034 205 18 # --- END OF GFF DUMP --- # -- completed exonerate analysis