Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q TXNRD1.anole.fa -t TXNRD1.extraccio.KQ747234.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000129_2.0 # Protein # Thioredoxin reductase 1 (TXNRD1) # Human Target: KQ747234.1:subseq(54378,79932) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold3463, whole genome shotgun sequence Model: protein2genome:local Raw score: 2238 Query range: 86 -> 649 Target range: 2909 -> 59932 87 : LysSerLeuCysValProTyrPheValLeuGluLeuAspGlnThr{G} >>>> Targe : 102 ||| !!||||||||||||!:! !||| !! ! ...::: {|} 1 LysProLeuCysValProPheHisValGluGlySerSerGluLys{G}+- 2910 : AAGCCTCTCTGTGTTCCCTTCCATGTTGAGGGTTcctcagaaaag{g}gc.......... : 2958 103 : t Intron 1 >>>> {lu}AspGlyArgAlaLeuGluGlyThrLeuSerGluLeuAla : 115 7126 bp {||}||||||!:! !|||:!!! !.!!|||! !||||||.!! ++{lu}AspGlyGlnGlnLeuLysGluAlaLeuTyrGluLeuThr 2959 : ...............ag{AA}GATGGGCAGCAACTGAAAGAAGCCTTGTATGAACTCACA : 20120 116 : AlaGluThrAspLeuProValValPheValLysGlnArgLysIleGlyGlyHisGlyPro : 135 !||||||...:!!|||||||||||||||:!!|||!:!:!!:!!|||||| ! ! ! MetGluThrSerValProValValPheValGlnGlnLysGlnValGlyGlyPheGlnLys 20121 : ATGGAGACCTCAGTGCCCGTCGTGTTTGTTCAACAAAAACAAGTCGGAGGTTTCCAGAAA : 20180 136 : ThrLeuLys >>>> Target Intron 2 >>>> AlaTyrGlnGluGlyArgLeuG : 146 ! !|||:!! 8058 bp |||:!!:!!!!:|||! !|||: IleLeuGlu++ ++AlaHisLysAspGlyThrLeuL 20181 : ATTTTAGAGgt.........................agGCACACAAGGACGGAACGCTTA : 28271 147 : lnLysLeuLeuLysMetAsnGlyProGluAspLeuProLysSerTyrAspTyrAspLeuI : 166 !!|||||||||:!!:!!||||||! !! !!!: ! ! ||||||||||||||||||| ysLysLeuLeuGluValAsnGlyGlnAlaGlu---GlyHisSerTyrAspTyrAspLeuI 28272 : AAAAGTTACTTGAAGTGAATGGCCAGGCAGAA---GGACATTCTTATGACTACGATCTGA : 28328 167 : leIleIleGlyGlyGlySerGlyGlyLeuAlaAlaAlaLys >>>> Target Intro : 180 ||:!!||||||||||||||||||||||||||||||:!!||| 7689 bp leValIleGlyGlyGlySerGlyGlyLeuAlaAlaSerLys++ 28329 : TTGTCATTGGAGGGGGCTCGGGAGGACTGGCTGCTTCCAAGgt................. : 28372 181 : n 3 >>>> GluAlaAlaGlnTyrGlyLysLysValMetValLeuAspPheValThrPr : 196 |||||||||:!! !||||||||||||:!!|||||||||!:!|||..!|| ++GluAlaAlaLysLeuGlyLysLysValLeuValLeuAspTyrValValPr 28373 : ........agGAAGCTGCCAAGCTCGGCAAGAAGGTGCTGGTGCTGGATTATGTTGTCCC : 36107 197 : oThrProLeuGlyThrArgTrp{G} >>>> Target Intron 4 >>>> {ly}Le : 205 ||||||||||||||||||||||{|} 958 bp {||}|| oThrProLeuGlyThrArgTrp{G}++ ++{ly}Le 36108 : TACTCCTTTGGGAACTAGATGG{G}gt.........................ag{gT}CT : 37092 206 : uGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLe : 225 ||||||||||||||||||||||||||||||||||||||||||||||||||||.!!||||| uGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnThrAlaLe 37093 : TGGAGGAACTTGTGTCAATGTCGGATGCATACCTAAAAAGCTGATGCACCAGACAGCTTT : 37152 226 : uLeuGlyGlnAlaLeuGlnAspSerArgAsnTyrGlyTrpLysValGluGluThr{V} : 244 |||||||||||||:!!...|||:!!! !!!.!:!||||||:!!:!!||| ! !{|} uLeuGlyGlnAlaIleSerAspAlaProLysPheGlyTrpGlnLeuGluProLys{V}++ 37153 : GCTTGGACAAGCCATATCTGATGCACCCAAGTTTGGGTGGCAATTGGAACCCAAA{G}gt : 37210 245 : >>>> Target Intron 5 >>>> {al}LysHisAspTrpAspArgMetIleGluAl : 254 1226 bp {||}!!.|||..!|||!!:! !|||! !||||| ++{al}AsnHisSerTrpGluThrMetLysGluAl 37211 : .........................ag{TA}AATCACAGCTGGGAGACCATGAAAGAAGC : 38465 255 : aValGlnAsnHisIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLy : 274 ||||||||||:!!|||||||||||||||||||||||||||||||||||||||!!:!!.|| aValGlnAsnTyrIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgAspAsnLy 38466 : GGTTCAGAATTACATTGGCTCTCTGAACTGGGGTTACCGGGTGGCCCTCCGAGATAATAA : 38525 275 : sValValTyrGluAsnAlaTyrGlyGlnPheIleGlyProHisArgIleLys >>>> T : 292 ||||..!||||||||||||||||||:!!|||:!!||||||||||||:!!||| sValThrTyrGluAsnAlaTyrGlyGluPheValGlyProHisArgValLys++ 38526 : AGTCACATATGAGAACGCTTATGGAGAATTTGTTGGGCCTCACAGAGTTAAGgt...... : 38581 293 : arget Intron 6 >>>> AlaThrAsnAsnLysGlyLysGluLysIleTyrSerAla : 304 2871 bp |||||||||!:!|||||| !||||||.!!|||!!!||| ++AlaThrAsnSerLysGlyValGluLysPheTyrThrAla 38582 : ...................agGCAACAAATAGCAAAGGGGTAGAGAAGTTTTACACAGCA : 41486 305 : GluArgPheLeuIleAlaThrGlyGluArgProArgTyrLeuGlyIleProGlyAspLys : 324 |||||||||||||||||||||||||||||||||||||||! !|||||||||||||||||| GluArgPheLeuIleAlaThrGlyGluArgProArgTyrProGlyIleProGlyAspLys 41487 : GAGAGATTTCTGATTGCAACTGGAGAAAGGCCCCGTTATCCCGGCATCCCTGGAGACAAG : 41546 325 : GluTyrCysIleSer{Se} >>>> Target Intron 7 >>>> {r}AspAspLeu : 333 ||||||||||||!!!{||} 1543 bp {|}||||||||| GluTyrCysIleThr{Se}++ ++{r}AspAspLeu 41547 : GAATATTGCATCACC{AG}gt.........................ag{c}gatGATCTC : 43116 334 : PheSerLeuProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeu : 353 ||||||||| !|||||||||||||||||||||||||||||||||||||||||||||||| PheSerLeuTyrTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeu 43117 : TTCTCCCTGTATTACTGCCCAGGAAAGACATTGGTGGTTGGGGCTTCCTATGTCGCCCTT : 43176 354 : GluCysAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValArgSerIle : 373 ||||||||||||||||||||||||:!!||||||||||||||||||||||||||||||||| GluCysAlaGlyPheLeuAlaGlyLeuGlyLeuAspValThrValMetValArgSerIle 43177 : GAGTGTGCGGGGTTCCTTGCAGGTCTTGGTTTAGATGTGACTGTGATGGTGCGCTCCATT : 43236 374 : LeuLeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGluHis : 393 ||||||||||||||||||||||||||||||||||||||||||||||||||||||! !||| LeuLeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGlyHis 43237 : CTTCTAAGAGGCTTTGATCAGGATATGGCAAACAAAATAGGGGAGCACATGGAAGGACAT : 43296 394 : GlyIleLysPheIleArgGlnPheValProIleLys >>>> Target Intron 8 > : 406 |||:!!||||||||||||::!! !||||||! !||| 3285 bp GlyValLysPheIleArgArgCysValProThrLys++ 43297 : GGAGTCAAGTTCATTAGGAGATGTGTGCCCACCAAGgt...................... : 43337 407 : >>> ValGluGlnIleGluAlaGlyThrProGlyArgLeuArgValValAlaGlnSerT : 424 :!!|||||||||:!!! !||||||||||||! !|||!:!|||..!|||!:: !| ++IleGluGlnIleLysGluGlyThrProGlyIleLeuLysValThrAlaArgHisT 43338 : ...agATTGAACAGATCAAGGAAGGAACTCCTGGGATACTAAAAGTCACAGCTCGTCATA : 46674 425 : hrAsnSerGluGluIleIleGluGlyGluTyrAsnThr >>>> Target Intron 9 : 437 ||.!.!:!...||||||||||||||||||||||||||| 612 bp hrGluAsnSerGluIleIleGluGlyGluTyrAsnThr++ 46675 : CTGAGAACTCTGAAATTATTGAAGGAGAATACAATACAgt.................... : 46715 438 : >>>> ValMetLeuAlaIleGlyArgAspAlaCysThrArgLysIleGlyLeuGluTh : 454 |||:!!||||||||||||||||||:!!||||||||||||||||||||||||! ++ValLeuLeuAlaIleGlyArgAspSerCysThrArgLysIleGlyLeuGluAr 46716 : .....agGTGTTGCTGGCCATTGGGAGGGATTCATGTACAAGAAAAATTGGCTTGGAGAG : 47376 455 : rValGlyValLysIleAsnGlu{Ly} >>>> Target Intron 10 >>>> {s}T : 463 !:!!||||||||||||||||||{||} 1394 bp {|}| gIleGlyValLysIleAsnGlu{Ly}++ ++{s}T 47377 : GATTGGAGTGAAGATCAATGAG{AA}gt..........................ag{A}a : 48797 464 : hrGlyLysIleProValThrAspGluGluGlnThrAsnValProTyrIleTyrAlaIleG : 483 |||||||||||||||||..!|||||||||||||||||||||||||||||||||||||||| hrGlyLysIleProValAsnAspGluGluGlnThrAsnValProTyrIleTyrAlaIleG 48798 : caggaaaaatccctgtcaaTGATGAAGAGCAGACGAACGTGCCTTATATCTATGCCATCG : 48857 484 : lyAspIleLeuGluAspLysValGluLeuThrProValAlaIleGlnAlaGlyArgLeuL : 503 |||||:!:||||||||||||:!!||||||||||||||||||||||||||||||||||||| lyAspValLeuGluAspLysLeuGluLeuThrProValAlaIleGlnAlaGlyArgLeuL 48858 : GAGATGTGTTGGAAGACAAGTTGGAACTCACACCGGTGGCGATTCAAGCGGGTCGGCTGT : 48917 504 : euAlaGlnArgLeuTyrAlaGlySerThrValLys >>>> Target Intron 11 > : 515 ||!.!!:!|||||||||!.!||||||.!!|||||| 988 bp euValArgArgLeuTyrGlyGlySerAlaValLys++ 48918 : TGGTACGGAGGCTTTATGGCGGATCAGCTGTAAAGgt....................... : 48955 516 : >>> CysAspTyrGluAsnValProThrThrValPheThrProLeuGluTyrGlyAlaC : 533 |||||||||! !||||||||||||||||||||||||||||||||||||||||||| ++CysAspTyrValAsnValProThrThrValPheThrProLeuGluTyrGlyAlaC 48956 : ...agTGTGACTATGTGAATGTTCCAACCACAGTGTTCACCCCACTTGAATATGGAGCCT : 49995 534 : ysGlyLeuSerGluGluLysAlaValGluLysPheGlyGluGluAsnIleGlu >>>> : 551 |||||! !|||||||||||||||:!!||||||||||||!!:!!:||||||||| ysGlyTyrSerGluGluLysAlaIleGluLysPheGlyAspAspAsnIleGlu++ 49996 : GTGGCTATTCAGAAGAAAAAGCCATAGAGAAATTTGGAGATGATAACATTGAGgt..... : 50051 552 : Target Intron 12 >>>> ValTyrHisSerTyrPheTrpProLeuGluTrpThrI : 563 1410 bp ||||||||||||||||||||||||||||||||||||: ++ValTyrHisSerTyrPheTrpProLeuGluTrpThrV 50052 : .....................agGTTTATCAcagttatttctggccactggaaTGGACTG : 51495 564 : leProSerArgAspAsnAsnLysCysTyrAlaLysIleIleCysAsnThrLysAspAsn : 583 !!|||:!!||||||||||||||||||||||||||||||||||||:!!! ! !|||!!. alProAlaArgAspAsnAsnLysCysTyrAlaLysIleIleCysHisIleProAspLys+ 51496 : TCCCAGCCCGAGATAACAATAAATGCTATGCAAAAATCATTTGCCACATTCCAGATAAGg : 51555 584 : >>>> Target Intron 13 >>>> GluArgValValGlyPheHisValLeuGlyP : 593 680 bp |||||||||:!!||||||||||||||||||| + ++GluArgValIleGlyPheHisValLeuGlyP 51556 : t..........................agGAGCGTGTTATTGGTTTTCATGTGCTTGGTC : 52265 594 : roAsnAlaGlyGluValThrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysL : 613 ||||||||||||||:!!|||||||||||||||||||||:!!|||||||||:!!||||||: roAsnAlaGlyGluMetThrGlnGlyPheAlaAlaAlaIleLysCysGlyMetThrLysG 52266 : CAAATGCTGGAGAAATGACTCAAGGATTTGCAGCGGCCATAAAATGTGGAATGACAAAAG : 52325 614 : ysGlnLeuAspSerThrIleGlyIleHisProValCysAlaGlu >>>> Target In : 628 !!! !||||||||||||||||||||||||||||||||||||||| 7497 luLeuLeuAspSerThrIleGlyIleHisProValCysAlaGlu++ 52326 : AACTGTTGGACAGCACAATAGGAATTCATCCAGTCTGTGCAGAGgt.............. : 52372 629 : tron 14 >>>> ValPheThrThrLeuSerValThrLysArgSerGlyAlaSerIleL : 643 bp |||||||||!:!||||||||||||||||||||||||!.!..!|||| ++ValPheThrSerLeuSerValThrLysArgSerGlyGlyAspIleL 52373 : ............aggTATTTACCAGCTTGTCAGTGACAAAGCGCTCTGGTGGAGATATTC : 59912 644 : euGlnAlaGlyCysUnkGly : 649 |||||:!!|||||| ||| euGlnSerGlyCys***Gly 59913 : TTCAGTCTGGATGCTGAGGT : 59932 vulgar: SPP00000129_2.0 86 649 . KQ747234.1:subseq(54378,79932) 2909 59932 + 2238 M 15 45 S 0 1 5 0 2 I 0 17122 3 0 2 S 1 2 M 36 108 5 0 2 I 0 8054 3 0 2 M 18 54 G 1 0 M 22 66 5 0 2 I 0 7685 3 0 2 M 24 72 S 0 1 5 0 2 I 0 954 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 1222 3 0 2 S 1 2 M 47 141 5 0 2 I 0 2867 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1539 3 0 2 S 1 1 M 75 225 5 0 2 I 0 3281 3 0 2 M 31 93 5 0 2 I 0 608 3 0 2 M 25 75 S 0 2 5 0 2 I 0 1390 3 0 2 S 1 1 M 52 156 5 0 2 I 0 984 3 0 2 M 36 108 5 0 2 I 0 1406 3 0 2 M 32 96 5 0 2 I 0 676 3 0 2 M 45 135 5 0 2 I 0 7493 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-12-03 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local gene 2910 59932 2238 + . gene_id 1 ; sequence SPP00000129_2.0 ; gene_orientation + KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 2910 2955 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 2910 2955 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 2956 2957 . + . intron_id 1 ; splice_site "gc" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 2956 20081 . + . intron_id 1 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 20080 20081 . + . intron_id 0 ; splice_site "AG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 20082 20191 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 20082 20191 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 20192 20193 . + . intron_id 2 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 20192 28249 . + . intron_id 2 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 28248 28249 . + . intron_id 1 ; splice_site "AG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 28250 28369 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 28250 28369 . + . insertions 0 ; deletions 1 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 28370 28371 . + . intron_id 3 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 28370 36058 . + . intron_id 3 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 36057 36058 . + . intron_id 2 ; splice_site "aG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 36059 36131 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 36059 36131 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 36132 36133 . + . intron_id 4 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 36132 37089 . + . intron_id 4 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 37088 37089 . + . intron_id 3 ; splice_site "ag" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 37090 37209 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 37090 37209 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 37210 37211 . + . intron_id 5 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 37210 38435 . + . intron_id 5 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 38434 38435 . + . intron_id 4 ; splice_site "AG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 38436 38578 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 38436 38578 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 38579 38580 . + . intron_id 6 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 38579 41449 . + . intron_id 6 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 41448 41449 . + . intron_id 5 ; splice_site "AG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 41450 41565 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 41450 41565 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 41566 41567 . + . intron_id 7 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 41566 43108 . + . intron_id 7 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 43107 43108 . + . intron_id 6 ; splice_site "ag" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 43109 43334 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 43109 43334 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 43335 43336 . + . intron_id 8 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 43335 46619 . + . intron_id 8 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 46618 46619 . + . intron_id 7 ; splice_site "AG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 46620 46712 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 46620 46712 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 46713 46714 . + . intron_id 9 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 46713 47324 . + . intron_id 9 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 47323 47324 . + . intron_id 8 ; splice_site "AG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 47325 47401 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 47325 47401 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 47402 47403 . + . intron_id 10 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 47402 48795 . + . intron_id 10 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 48794 48795 . + . intron_id 9 ; splice_site "AG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 48796 48952 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 48796 48952 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 48953 48954 . + . intron_id 11 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 48953 49940 . + . intron_id 11 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 49939 49940 . + . intron_id 10 ; splice_site "AG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 49941 50048 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 49941 50048 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 50049 50050 . + . intron_id 12 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 50049 51458 . + . intron_id 12 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 51457 51458 . + . intron_id 11 ; splice_site "AG" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 51459 51554 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 51459 51554 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 51555 51556 . + . intron_id 13 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 51555 52234 . + . intron_id 13 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 52233 52234 . + . intron_id 12 ; splice_site "ag" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 52235 52369 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 52235 52369 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice5 52370 52371 . + . intron_id 14 ; splice_site "GT" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local intron 52370 59866 . + . intron_id 14 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local splice3 59865 59866 . + . intron_id 13 ; splice_site "ag" KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local cds 59867 59932 . + . KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local exon 59867 59932 . + . insertions 0 ; deletions 0 KQ747234.1:subseq(54378,79932) exonerate:protein2genome:local similarity 2910 59932 2238 + . alignment_id 1 ; Query SPP00000129_2.0 ; Align 2910 87 45 ; Align 20084 103 108 ; Align 28250 139 54 ; Align 28304 158 66 ; Align 36059 180 72 ; Align 37092 205 117 ; Align 38438 245 141 ; Align 41450 292 114 ; Align 43110 331 225 ; Align 46620 406 93 ; Align 47325 437 75 ; Align 48797 463 156 ; Align 49941 515 108 ; Align 51459 551 96 ; Align 52235 583 135 ; Align 59867 628 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis