Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q Sel15_anole.fa -t extraccioSel15.fa]
Hostname: [ws101071u]

C4 Alignment:
------------
         Query: Sel15ANOLE
        Target: KQ752576.1:subseq(2237524,52446) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 622
   Query range: 0 -> 137
  Target range: 42446 -> 9999

     1 : ValSerIleTyrGlyAlaGluLeuSerSerGluAlaCysArgAspLeuGlyPheSerSer :    20
         ||||||:!!||||||.!!||||||||||||||||||||||||!!:|||||||||||||||
         ValSerValTyrGlyThrGluLeuSerSerGluAlaCysArgGluLeuGlyPheSerSer
 42446 : GTATCTGTATATGGAACAGAGTTATCATCAGAGGCATGCAGAGAGTTGGGCTTTTCCAGT : 42389

    21 : AsnLeuLeuCysSerSerCysAspLeuLeuSerGlnPheSerLeuAsnGlnLeuAspPro :    40
         |||||||||||||||||||||||||||||||||||||||...|||!:!:!!|||||||||
         AsnLeuLeuCysSerSerCysAspLeuLeuSerGlnPheGlyLeuSerGluLeuAspPro
 42388 : AACTTGCTATGCAGTTCTTGTGACCTgcttagccagtttggtttaAGTGAGCTAGATCCA : 42329

    41 : LeuCysArgAsnCysCysGlnGluGluAlaGlnSerGluThrArgLys  >>>> Targe :    57
         !!!||||||!!.||||||||||||||||||||| !!|||.!!!:!|||           2
         PheCysArgLysCysCysGlnGluGluAlaGlnProGluAlaLysLys++          
 42328 : TTTTGTAGGAAGTGTTGCCAAGAAGAAGCTCAGCCTGAAGCTAAAAAGgt.......... : 42276

    58 : t Intron 1 >>>>  LeuTyrProGlyAlaIleLeuGluValCysGlyUnkLysLeuG :    71
         3748 bp          |||||| !!||||||||||||||||||||||||   |||||||
                        ++LeuTyrSerGlyAlaIleLeuGluValCysGly***LysLeuG
 42275 : ...............agCTGTATTCAGGGGCTATTCTTGAAGTCTGTGGATGAAAATTGG : 18488

    72 : lyArgPheProGlnValGln{A}  >>>> Target Intron 2 >>>>  {la}PheV :    80
         ||||||||||||||||||||{|}           6864 bp           {||}||||
         lyArgPheProGlnValGln{A}++                         ++{la}PheV
 18487 : GGAGGTTCCCTCAGGTTCAG{G}gt.........................ag{CT}TTTG : 11597

    81 : alArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLys  >>>> Target In :    95
         ||||||||||||||||||||||||||||||||||||||||||||           1424 
         alArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLys++              
 11596 : TCAGGAGTGACAAGCCGAAACTGTTCAGGGGACTACAGATCAAGgt.............. : 11550

    96 : tron 3 >>>>  TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAlaGl :   110
         bp           ||||||||||||||||||||||||||||||||||||||||||! !||
                    ++TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAspGl
 11549 : ...........agtATGTACGGGGCTCTGACCCTGTACTGAAGCTCTTGGATGACGATGG : 10083

   111 : yAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluPheLe :   130
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         yAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluPheLe
 10082 : GAACATTGCTGAAGAGCTGAGCATTCTCAAGTGGAATACAGACAGTGTGGAAGAATTCCT : 10023

   131 : uSerGluLysLeuGluArgLeu :   137
         ||||||||||||||||||||||
         uSerGluLysLeuGluArgLeu
 10022 : GAGTGAAAAACTAGAGCGCCTC : 10000

vulgar: Sel15ANOLE 0 137 . KQ752576.1:subseq(2237524,52446) 42446 9999 - 622 M 56 168 5 0 2 I 0 23744 3 0 2 M 21 63 S 0 1 5 0 2 I 0 6860 3 0 2 S 1 2 M 16 48 5 0 2 I 0 1420 3 0 2 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-10-31
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	gene	10000	42446	622	-	.	gene_id 1 ; sequence Sel15ANOLE ; gene_orientation +
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	cds	42279	42446	.	-	.	
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	exon	42279	42446	.	-	.	insertions 0 ; deletions 0
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	splice5	42277	42278	.	-	.	intron_id 1 ; splice_site "GT"
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	intron	18531	42278	.	-	.	intron_id 1
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	splice3	18531	18532	.	-	.	intron_id 0 ; splice_site "AG"
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	cds	18467	18530	.	-	.	
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	exon	18467	18530	.	-	.	insertions 0 ; deletions 0
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	splice5	18465	18466	.	-	.	intron_id 2 ; splice_site "GT"
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	intron	11603	18466	.	-	.	intron_id 2
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	splice3	11603	11604	.	-	.	intron_id 1 ; splice_site "AG"
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	cds	11553	11602	.	-	.	
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	exon	11553	11602	.	-	.	insertions 0 ; deletions 0
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	splice5	11551	11552	.	-	.	intron_id 3 ; splice_site "GT"
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	intron	10129	11552	.	-	.	intron_id 3
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	splice3	10129	10130	.	-	.	intron_id 2 ; splice_site "ag"
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	cds	10000	10128	.	-	.	
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	exon	10000	10128	.	-	.	insertions 0 ; deletions 0
KQ752576.1:subseq(2237524,52446)	exonerate:protein2genome:local	similarity	10000	42446	622	-	.	alignment_id 1 ; Query Sel15ANOLE ; Align 42447 1 168 ; Align 18531 57 63 ; Align 11601 79 48 ; Align 10129 95 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis