Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SEPHS1.anole.fa -t SEPHS1.extraccio.KQ752624.1.fa] Hostname: [ws101067u] C4 Alignment: ------------ Query: SEPHS1.anole Target: KQ752624.1:subseq(233509,75463) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold1569, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1986 Query range: 0 -> 392 Target range: 55463 -> 19999 1 : MetSerValArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgLeu : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetSerValArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgLeu 55463 : ATGTCTGTTCGGGAGTCCTTTAATCCAGAAAGTTATGAACTTGacaagagttttcggcta : 55406 21 : ThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGlnLys : 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGlnLys 55405 : acACGATTTACGGAACTGAAAGGCACCGGTTGTAAAGTGCCTCAGGATGTCTTACAGAAA : 55346 41 : LeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGlyAlaVal : 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGlyAlaVal 55345 : TTGCTTGAATCTCTACAAGAAAATCACTTCCAAGAAGATGAACAGTTTTTGGGAGCTGTT : 55286 61 : MetProArgLeu{G} >>>> Target Intron 1 >>>> {ly}IleGlyMetAsp : 69 ||||||||||||{|} 8669 bp {||}|||||||||||| MetProArgLeu{G}++ ++{ly}IleGlyMetAsp 55285 : ATGCCAAGATTA{G}gt.........................ag{GA}ATTGGAATGGAC : 46590 70 : ThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspTyrIle : 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspTyrIle 46589 : ACTTGTGTTATTCCCTTAAGGCATGGAGGCCTATCTCTGGTACAGACAACAGATTACATT : 46530 90 : TyrProIleValAspAspProTyrMetMet >>>> Target Intron 2 >>>> G : 100 |||||||||||||||||||||||||||||| 2916 bp | TyrProIleValAspAspProTyrMetMet++ ++G 46529 : TATCCTATTGTGGATGATCCTTATATGATGgt.........................agG : 43581 101 : lyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysA : 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysA 43580 : GACGCATAGCCTGTGCCAATGTTCTGAGTGATCTTTATGCTATGGGAGTCACAGAGTGTG : 43521 121 : spAsnMetLeuMetLeuLeuGlyIleSerAsnLysMetThrAspArg >>>> Target : 136 ||||||||||||||||||||||||||||||||||||||||||||||| 60 spAsnMetLeuMetLeuLeuGlyIleSerAsnLysMetThrAspArg++ 43520 : ATAACATGTTGATGCTTCTTGGGATCAGCAATAAAATGACAGACAGGgt........... : 43471 137 : Intron 3 >>>> GluArgAspLysIleMetProLeuIleIleGlnGlyPheLysAs : 150 98 bp ||||||||||||:!:|||||||||:!!||||||||||||||||| ++GluArgAspLysValMetProLeuValIleGlnGlyPheLysAs 43470 : ..............agGAAAGGGACAAAGTGATGCCTCTCGTTATACAGGGTTTCAAAGA : 37333 151 : pAlaAlaGluGluAlaGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIl : 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| pAlaAlaGluGluAlaGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIl 37332 : CGCAGCAGAGGAGGCAGGAACATCAGTGACTGGTGGTCAAACAGTGTTAAATCCTTGGAT : 37273 171 : eValLeuGlyGlyValAlaThrThrValCysGlnProAsnGluPheIle{Me} >>>> : 187 |||||||||||||||||||||||||||||||||||||||||||||||||{||} eValLeuGlyGlyValAlaThrThrValCysGlnProAsnGluPheIle{Me}++ 37272 : CGTTTTAGGAGGAGTAGCTACAACAGTCTGTCAGCCTAATGAATTTATA{AT}gt..... : 37218 188 : Target Intron 4 >>>> {t}ProAspAsnAlaValProGlyAspValLeuValLe : 199 2166 bp {|}||||||||||||||||||||||||||||||||||| ++{t}ProAspAsnAlaValProGlyAspValLeuValLe 37217 : ....................ag{G}CCAGATAATGCTGTACCAGGAGATGTGCTTGTGTT : 35020 200 : uThrLysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIleVal{L : 219 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||{| uThrLysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIleVal{L 35019 : AACTAAACCTTTGGGAACACAAGTGGCTGTAGCTGTTCACCAGTGGCTAGATATAGTA{A : 34960 220 : } >>>> Target Intron 5 >>>> {ys}LysTrpAsnLysIleLysLeuValVa : 228 } 9354 bp {||}|||||||||||||||||||||||||| }++ ++{ys}LysTrpAsnLysIleLysLeuValVa 34959 : }gt.........................ag{aa}aaatggaataaaatcaaaTTGGTTGT : 25579 229 : lThrGlnGluAspValGluLeuAlaTyrGlnGluAlaMetMetAsnMetAlaArgLeuAs : 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lThrGlnGluAspValGluLeuAlaTyrGlnGluAlaMetMetAsnMetAlaArgLeuAs 25578 : CACACAAGAAGATGTGGAGCTAGCATATCAAGAAGCAATGATGAATATGGCACGGCTCAA : 25519 249 : nArgThr{A} >>>> Target Intron 6 >>>> {la}AlaGlyLeuMetHisTh : 257 |||||||{|} 3635 bp {||}||||||||||||||||| nArgThr{A}++ ++{la}AlaGlyLeuMetHisTh 25518 : TAGAACA{G}gt.........................ag{CT}GCAGGGCTCATGCACAC : 21857 258 : rPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisAlaGlnAs : 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| rPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisAlaGlnAs 21856 : GTTCAATGCACATGCAGCCACAGACATTACAGGTTTTGGAATCCTGGGACATGCGCAGAA : 21797 278 : nLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProValLeuAl : 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| nLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProValLeuAl 21796 : TCTAGCAAAACAGCAGCGCAATGAAGTGTCTTTTGTTATACATAACCTTCCTGTTCTTGC : 21737 298 : aLysMetAlaAlaValSerLysAlaCysGlyAsnMetPheGlyLeuMetHisGlyThrCy : 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| aLysMetAlaAlaValSerLysAlaCysGlyAsnMetPheGlyLeuMetHisGlyThrCy 21736 : CAAAATGGCTGCAGTTAGCAAAGCATGTGGCAATATGTTTGGTCTCATGCATGGGACATG : 21677 318 : sProGluThrSer{G} >>>> Target Intron 7 >>>> {ly}GlyLeuLeuIl : 326 |||||||||||||{|} 1450 bp {||}||||||||||| sProGluThrSer{G}++ ++{ly}GlyLeuLeuIl 21676 : TCCTGAGACTTCA{G}gt.........................ag{GG}GGCCTTCTTAT : 20200 327 : eCysLeuProArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGl : 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| eCysLeuProArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGl 20199 : CTGTTTACCTCGTGAACAAGCAGCACGCTTCTGTGCTGAAATCAAGTCTCCAAAATATGG : 20140 347 : yGluGlyHisGlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIl : 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yGluGlyHisGlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIl 20139 : TGAAGGACACCAAGCGTGGATCATTGGGATTGTAGAAAAGGGCAATCGTACTGCCAGAAT : 20080 367 : eIleAspLysProArgIleIleGluValAlaProGlnValAlaThrGlnAsnValAsnPr : 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| eIleAspLysProArgIleIleGluValAlaProGlnValAlaThrGlnAsnValAsnPr 20079 : TATAGACAAACCACGAATAATTGAAGTTGCACCGCAAGTCGCCACTCAGAATGTGAACCC : 20020 387 : oThrProGlyAlaValSer : 392 |||||||||||||..!||| oThrProGlyAlaThrSer 20019 : AACGCCTGGCGCAACTTCT : 20000 vulgar: SEPHS1.anole 0 392 . KQ752624.1:subseq(233509,75463) 55463 19999 - 1986 M 64 192 S 0 1 5 0 2 I 0 8665 3 0 2 S 1 2 M 34 102 5 0 2 I 0 2912 3 0 2 M 36 108 5 0 2 I 0 6094 3 0 2 M 51 153 S 0 2 5 0 2 I 0 2162 3 0 2 S 1 1 M 31 93 S 0 1 5 0 2 I 0 9350 3 0 2 S 1 2 M 31 93 S 0 1 5 0 2 I 0 3631 3 0 2 S 1 2 M 70 210 S 0 1 5 0 2 I 0 1446 3 0 2 S 1 2 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local gene 20000 55463 1986 - . gene_id 1 ; sequence SEPHS1.anole ; gene_orientation + KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local cds 55271 55463 . - . KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local exon 55271 55463 . - . insertions 0 ; deletions 0 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice5 55269 55270 . - . intron_id 1 ; splice_site "GT" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local intron 46602 55270 . - . intron_id 1 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice3 46602 46603 . - . intron_id 0 ; splice_site "AG" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local cds 46498 46601 . - . KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local exon 46498 46601 . - . insertions 0 ; deletions 0 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice5 46496 46497 . - . intron_id 2 ; splice_site "GT" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local intron 43582 46497 . - . intron_id 2 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice3 43582 43583 . - . intron_id 1 ; splice_site "AG" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local cds 43474 43581 . - . KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local exon 43474 43581 . - . insertions 0 ; deletions 0 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice5 43472 43473 . - . intron_id 3 ; splice_site "GT" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local intron 37376 43473 . - . intron_id 3 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice3 37376 37377 . - . intron_id 2 ; splice_site "AG" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local cds 37221 37375 . - . KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local exon 37221 37375 . - . insertions 0 ; deletions 0 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice5 37219 37220 . - . intron_id 4 ; splice_site "GT" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local intron 35055 37220 . - . intron_id 4 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice3 35055 35056 . - . intron_id 3 ; splice_site "AG" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local cds 34960 35054 . - . KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local exon 34960 35054 . - . insertions 0 ; deletions 0 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice5 34958 34959 . - . intron_id 5 ; splice_site "GT" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local intron 25606 34959 . - . intron_id 5 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice3 25606 25607 . - . intron_id 4 ; splice_site "ag" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local cds 25510 25605 . - . KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local exon 25510 25605 . - . insertions 0 ; deletions 0 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice5 25508 25509 . - . intron_id 6 ; splice_site "GT" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local intron 21875 25509 . - . intron_id 6 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice3 21875 21876 . - . intron_id 5 ; splice_site "AG" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local cds 21662 21874 . - . KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local exon 21662 21874 . - . insertions 0 ; deletions 0 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice5 21660 21661 . - . intron_id 7 ; splice_site "GT" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local intron 20212 21661 . - . intron_id 7 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local splice3 20212 20213 . - . intron_id 6 ; splice_site "AG" KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local cds 20000 20211 . - . KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local exon 20000 20211 . - . insertions 0 ; deletions 0 KQ752624.1:subseq(233509,75463) exonerate:protein2genome:local similarity 20000 55463 1986 - . alignment_id 1 ; Query SEPHS1.anole ; Align 55464 1 192 ; Align 46600 66 102 ; Align 43582 100 108 ; Align 37376 136 153 ; Align 35054 188 93 ; Align 25604 220 93 ; Align 21873 252 210 ; Align 20210 323 210 # --- END OF GFF DUMP --- # -- completed exonerate analysis