Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOW2.anole.fa -t SELENOW2.extraccio.KQ752146.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000127_2.0 # Protein # Selenoprotein W2 (SELENOW2) # Human 
        Target: KQ752146.1:subseq(166799,44984) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold875, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 442
   Query range: 17 -> 115
  Target range: 26617 -> 19999

    18 : GluProGlySerGlyValArgIleValValGluTyr{Cy}  >>>> Target Intron :    30
         ||| !!|||!!!||||||||||||||||||||||||{||}           1594 bp  
         GluAlaGlyArgGlyValArgIleValValGluTyr{Cy}++                  
 26617 : GAGGCCGGAAGAGGAGTCCGGATCGTTGTCGAGTAC{TG}gt.................. : 26577

    31 :  1 >>>>  {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaVal :    46
                  {|}:!!|||||||||||||||:!!.!!||||||||||||||||||||||||
                ++{s}LysProCysGlyPheGluSerAlaTyrLeuGluLeuAlaSerAlaVal
 26576 : .......ag{C}AAGCCCTGCGGCTTTGAGTCCGCGTACCTGGAGCTGGCGAGTGCAGTC : 24939

    47 : LysGluGlnTyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Ta :    63
         ||||||:!!||||||! !:!:|||||||||||||||||||||||||||{|}         
         LysGluGluTyrProAspValGluIleGluSerArgLeuGlyGlyThr{G}++       
 24938 : AAGGAGGAGTATCCAGATGTGGAGATCGAGTCCCGACTTGGAGGAACA{G}gt....... : 24885

    64 : rget Intron 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPhe :    75
           2699 bp           {||}||||||||||||||||||||||||||||||||||||
                           ++{ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPhe
 24884 : ..................ag{GC}GCCTTTGAGATTGAAATAAATGGCCAGCTGGTCTTC : 22153

    76 : SerLysLeuGluAsnGlyGlyPheProTyrGluLysAsp  >>>> Target Intron  :    89
         |||||||||||||||||||||||||||||||||||||||           2031 bp   
         SerLysLeuGluAsnGlyGlyPheProTyrGluLysAsp++                   
 22152 : TCCAAGCTCGAGAACGGAGGATTCCCCTACGAGAAAGATgt................... : 22109

    90 : 3 >>>>  LeuIleGluAlaIleArgArgAlaSerAsnGlyGluThrLeuGluLysIleT :   106
                 ||||||||||||||||||||||||!!!||||||||| !!|||||||||||||
               ++LeuIleGluAlaIleArgArgAlaArgAsnGlyGluProLeuGluLysIleT
 22108 : ......agCTCATCGAAGCCATCCGGAGGGCCAGAAATGGGGAGCCGCTCGAGAAGATCA : 20029

   107 : hrAsnSerArgProProCysValIleLeu :   115
         ||!!.||||||||||||||||||||||||
         hrLysSerArgProProCysValIleLeu
 20028 : CCAAGAGCCGTCCGCCGTGCGTCATCCTt : 20000

vulgar: SPP00000127_2.0 17 115 . KQ752146.1:subseq(166799,44984) 26617 19999 - 442 M 12 36 S 0 2 5 0 2 I 0 1590 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 2695 3 0 2 S 1 2 M 25 75 5 0 2 I 0 2027 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-12-01
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	gene	20000	26617	442	-	.	gene_id 1 ; sequence SPP00000127_2.0 ; gene_orientation +
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	cds	26580	26617	.	-	.	
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	exon	26580	26617	.	-	.	insertions 0 ; deletions 0
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	splice5	26578	26579	.	-	.	intron_id 1 ; splice_site "GT"
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	intron	24986	26579	.	-	.	intron_id 1
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	splice3	24986	24987	.	-	.	intron_id 0 ; splice_site "AG"
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	cds	24888	24985	.	-	.	
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	exon	24888	24985	.	-	.	insertions 0 ; deletions 0
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	splice5	24886	24887	.	-	.	intron_id 2 ; splice_site "GT"
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	intron	22189	24887	.	-	.	intron_id 2
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	splice3	22189	22190	.	-	.	intron_id 1 ; splice_site "AG"
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	cds	22112	22188	.	-	.	
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	exon	22112	22188	.	-	.	insertions 0 ; deletions 0
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	splice5	22110	22111	.	-	.	intron_id 3 ; splice_site "GT"
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	intron	20081	22111	.	-	.	intron_id 3
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	splice3	20081	20082	.	-	.	intron_id 2 ; splice_site "AG"
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	cds	20000	20080	.	-	.	
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	exon	20000	20080	.	-	.	insertions 0 ; deletions 0
KQ752146.1:subseq(166799,44984)	exonerate:protein2genome:local	similarity	20000	26617	442	-	.	alignment_id 1 ; Query SPP00000127_2.0 ; Align 26618 18 36 ; Align 24985 31 96 ; Align 22187 64 75 ; Align 20081 89 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis