Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOW1.anole.fa -t SELENOW1.extraccio.KQ757562.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000226_2.0 # Protein # Selenoprotein W (SELENOW) # Anole lizard 
        Target: KQ757562.1:subseq(93223,40116) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold1038, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 209
   Query range: 2 -> 86
  Target range: 19855 -> 20116

     3 : MetAlaValLysIleLysValValTyrCysLeuAlaUnkGlyAsnTyrAsnLysTyrLeu :    22
         ||| !!:!!|||:!!!:!|||||||||!!   !.!!   |||::!  !  !||||||! !
         MetProLeuLysValArgValValTyr***GlyThr***GlySerSerProLysTyrGln
 19856 : ATGCCTCTCAAAGTCAGGGTGGTTTATTGAGGGACCTGAGGGTCCAGCCCCAAGTATCAG : 19913

    23 : LysLeuLysLysAspLeuGluLysGluPheProAspLysLeuGluIleThrGly<-><-> :    41
         :!!|||||||||!!:  !||||||:!!.!!|||..!|||! !||||||  !|||      
         GlnLeuLysLysGluSerGluLysLysIleProSerLysArgGluIleArgGly***Ala
 19914 : CAGCTCAAGAAGGAAAGTGAGAAAAAAATCCCAAGCAAGCGGGAAATACGTGgttaagcg : 19973

    42 : <->GluGlyThrProGluAlaThrGlyTrpPheGluValThrValAlaGluLysLeuVal :    59
                     |||   ...   ||||||||||||||||||||||||! !|||||||||
         ProProProProProProValMetGlyTrpPheGluValThrValAlaGlyLysLeuVal
 19974 : ccccccccccccccccccgttatggGATGGTTTGAAGTGACAGTTGCAGGAAAGCTGGTG : 20033

    60 : HisSerLysLysAsnGlyAspGlyTyrValAspAsnAspThrLysLeuGlyLysIleThr :    79
         |||||||||||||||||||||! !!:!|||||||||  !|||||||||  !||||||! !
         HisSerLysLysAsnGlyAspValPheValAspAsnThrThrLysLeuHisLysIleIle
 20034 : CATTCCAAGAAGAATGGAGATGTCTTTGTGGACAACACCACCAAGTTGCACAAGATAATC : 20093

    80 : ThrAlaIleLysAlaAlaLeu :    86
         |||||||||||||||||||||
         ThrAlaIleLysAlaAlaLeu
 20094 : ACAGCCATAAAAGCAGCCTTG : 20116

vulgar: SPP00000226_2.0 2 86 . KQ757562.1:subseq(93223,40116) 19855 20116 + 209 M 38 114 G 0 9 M 46 138
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ757562.1:subseq(93223,40116)	exonerate:protein2genome:local	gene	19856	20116	209	+	.	gene_id 1 ; sequence SPP00000226_2.0 ; gene_orientation .
KQ757562.1:subseq(93223,40116)	exonerate:protein2genome:local	cds	19856	20116	.	+	.	
KQ757562.1:subseq(93223,40116)	exonerate:protein2genome:local	exon	19856	20116	.	+	.	insertions 9 ; deletions 0
KQ757562.1:subseq(93223,40116)	exonerate:protein2genome:local	similarity	19856	20116	209	+	.	alignment_id 1 ; Query SPP00000226_2.0 ; Align 19856 3 114 ; Align 19979 41 138
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis