Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOU2.anole.fa -t SELENOU2.extraccio.KQ750554.1.fa] Hostname: [ws112181u] C4 Alignment: ------------ Query: SELENOU2.Anole Target: KQ750554.1:subseq(1179713,51104) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold355, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 737 Query range: 12 -> 225 Target range: 43113 -> 19999 13 : AlaPheProGlnProProProAlaProProProProGluAla >>>> Target Intr : 27 ||| |||||| |||||| ||| ||||||... 5059 bp AlaValProGlnArgProProPheValProAspProGluGly-+ 43113 : gctgttccccaaaggccaccctttgtccctgaccctgaaggaat................ : 43069 28 : on 1 >>>> AspLeuLeuPheArgGluAlaAlaGln >>>> Target Intron 2 : 36 |||||||||.!. !!:!!!.!::! 6743 bp ++AspLeuLeuLeuGlyGlnValSerPhe++ 43068 : .........agGACTTACTTCTAGGCCAGGTTAGTTTTgt.................... : 37983 37 : >>>> CysPro >>>> Target Intron 3 >>>> LeuLeuAspAlaAlaGly : 43 ..!||| 156 bp :!!:!!|||||||||||| ++AlaPro++ -+ValValAspAlaAlaGly 37982 : .....aggcCCCGgt.........................tgGTGGTGGACGCGGCAGGG : 31065 44 : GluLysThrProPheGlyThrLeuPheArgAspArgLysAlaIleValValPheValArg : 63 :!!::!! !|||||||||.!!|||!:!..!.!.!:!|||.!!|||||||||||||||||| LysArgIleProPheGlyAlaLeuTyrGluGlnGlnLysThrIleValValPheValArg 31064 : AAGCGGATTCCTTTCGGGGCCCTTTACGAGCAGCAAAAGACCATCGTGGTGTTCGTGCGG : 31005 64 : >>>> Target Intron 4 >>>> HisPheLeuCysTyrThrCysLysGluTyrV : 74 3758 bp |||||||||||||||.!!||||||||||||| ++ ++HisPheLeuCysTyrAlaCysLysGluTyrV 31004 : gt.........................agCATTTCTTGTGTTATGCCTGTAAGGAATATG : 27214 75 : alGluAspLeuAlaLysIleProLysLysTyrLeuGlu >>>> Target Intron 5 : 87 |||||||||||!.!||||||||||||:!!!:!|||:!! 980 bp alGluAspLeuGlyLysIleProLysGluPheLeuGln++ 27213 : TGGAGGATCTGGGGAAAATTCCCAAGGAATTTTTACAAgt.................... : 27173 88 : >>>> AspAlaAsnValArgLeuValValIleGlyGlnSerSerProAspHisIleLy : 104 ||||||||||||||||||||||||:!!||||||||||||! ! !!|||||||| ++AspAlaAsnValArgLeuValValValGlyGlnSerSerHisHisHisIleLy 27172 : .....agGATGCAAATGTAAGACTTGTAGTTGTTGGACAATCATCACACCACCACATTAA : 26144 105 : s >>>> Target Intron 6 >>>> ProPheCysHisLeuThrGlyTyrSerHis : 114 | 3298 bp |||||||||:!!|||||||||||| !!:!! s++ ++ProPheCysAsnLeuThrGlyTyrProTyr 26143 : Ggt.........................agCCTTTTTGTAATTTAACAGGTTACCCCTAT : 22816 115 : GluIleTyrValAspProGlyArgGluIleTyrLysIleLeuGlyMetLysAsnGlyGlu : 134 |||!!:!:!|||||||||! !||||||||||||!:!|||||||||||||||!..|||||| GluMetPheValAspProGluArgGluIleTyrArgIleLeuGlyMetLysArgGlyGlu 22815 : GAAATGTTTGTAGATCCTGAGAGGGAAATTTATAGAATACTTGGCATGAAAAGAGGGGAA : 22756 135 : ThrAlaAspThrPro{V} >>>> Target Intron 7 >>>> {al}GlnSerPro : 143 .!!:!!..!||| !!{|} 1404 bp {||}||||||||| AlaSerSerThrSer{V}++ ++{al}GlnSerPro 22755 : GCATCCAGCACATCA{G}gt.........................ag{TG}CAAAGTCCT : 21325 144 : HisValLysSerSerPheLeuSerGlyHisIleLysSerIleTrpArgAlaValPheSer : 163 |||||||||||||||.!.||||||||| !|||||||||!!:|||||||||:!! !||| HisValLysSerSerLeuLeuSerGlySerIleLysSerMetTrpArgAlaMetAlaSer 21324 : CATGTCAAATCCAGCCTGCTATCAGGAAGCATTAAGAGCATGTGGAGAGCAATGGCTAGC : 21265 164 : ProAlaPheAspPheGlnGlyAspProThrGlnGlnGlyGlyAlaLeuIleLeuGlyPro : 183 |||||||||||||||||||||||||||.!!||||||||||||.!!||||||||||||||| ProAlaPheAspPheGlnGlyAspProAlaGlnGlnGlyGlyThrLeuIleLeuGlyPro 21264 : CCTGCATTTGATTTCCAAGGAGATCCAGCTCAGCAGGGAGGAACTTTGATTTTAGGTCCA : 21205 184 : {G} >>>> Target Intron 8 >>>> {ly}AsnGlnValHisPheValHisLeu : 192 {|} 1077 bp {||}:!!:!!:!!||||||:!!|||||| {G}++ ++{ly}AspGluIleHisPheMetHisLeu 21204 : {G}gt.........................ag{gT}GATGAAATCCACTTTATGCACCTT : 20101 193 : AspLysAsnArgLeuAspHisValProIleAsnThrValLeuGlnLeuAlaGlyValGln : 212 |||||||||||||||! !|||!.!|||||||||.!!|||||||||||||||||||||||| AspLysAsnArgLeuAlaHisAlaProIleAsnAlaValLeuGlnLeuAlaGlyValGln 20100 : GACAAGAATCGGTTGGCTCATGCTCCCATTAATGCAGTTTTGCAACTTGCAGGAGTTCAA : 20041 213 : ThrValAsnPheThrGlnArgSerGlnIleIleAspVal : 225 ||||||:!!||||||.!.||||||!!.|||||||||||| ThrValAspPheThrAsnArgSerHisIleIleAspVal 20040 : ACAGTAGACTTTACAAACAGATCTCATATTATTGATGTA : 20000 vulgar: SELENOU2.Anole 12 225 . KQ750554.1:subseq(1179713,51104) 43113 19999 - 737 M 14 42 5 0 2 I 0 5055 3 0 2 M 9 27 5 0 2 I 0 6739 3 0 2 M 2 6 5 0 2 I 0 152 3 0 2 M 26 78 5 0 2 I 0 3754 3 0 2 M 23 69 5 0 2 I 0 976 3 0 2 M 18 54 5 0 2 I 0 3294 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1400 3 0 2 S 1 2 M 43 129 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-11 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local gene 20000 43113 737 - . gene_id 1 ; sequence SELENOU2.Anole ; gene_orientation + KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local cds 43072 43113 . - . KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local exon 43072 43113 . - . insertions 0 ; deletions 0 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice5 43070 43071 . - . intron_id 1 ; splice_site "at" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local intron 38013 43071 . - . intron_id 1 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice3 38013 38014 . - . intron_id 0 ; splice_site "AG" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local cds 37986 38012 . - . KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local exon 37986 38012 . - . insertions 0 ; deletions 0 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice5 37984 37985 . - . intron_id 2 ; splice_site "GT" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local intron 31243 37985 . - . intron_id 2 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice3 31243 31244 . - . intron_id 1 ; splice_site "ag" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local cds 31237 31242 . - . KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local exon 31237 31242 . - . insertions 0 ; deletions 0 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice5 31235 31236 . - . intron_id 3 ; splice_site "GT" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local intron 31081 31236 . - . intron_id 3 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice3 31081 31082 . - . intron_id 2 ; splice_site "TG" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local cds 31003 31080 . - . KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local exon 31003 31080 . - . insertions 0 ; deletions 0 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice5 31001 31002 . - . intron_id 4 ; splice_site "GT" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local intron 27245 31002 . - . intron_id 4 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice3 27245 27246 . - . intron_id 3 ; splice_site "AG" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local cds 27176 27244 . - . KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local exon 27176 27244 . - . insertions 0 ; deletions 0 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice5 27174 27175 . - . intron_id 5 ; splice_site "GT" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local intron 26196 27175 . - . intron_id 5 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice3 26196 26197 . - . intron_id 4 ; splice_site "AG" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local cds 26142 26195 . - . KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local exon 26142 26195 . - . insertions 0 ; deletions 0 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice5 26140 26141 . - . intron_id 6 ; splice_site "GT" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local intron 22844 26141 . - . intron_id 6 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice3 22844 22845 . - . intron_id 5 ; splice_site "AG" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local cds 22738 22843 . - . KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local exon 22738 22843 . - . insertions 0 ; deletions 0 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice5 22736 22737 . - . intron_id 7 ; splice_site "GT" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local intron 21334 22737 . - . intron_id 7 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice3 21334 21335 . - . intron_id 6 ; splice_site "AG" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local cds 21202 21333 . - . KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local exon 21202 21333 . - . insertions 0 ; deletions 0 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice5 21200 21201 . - . intron_id 8 ; splice_site "gt" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local intron 20125 21201 . - . intron_id 8 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local splice3 20125 20126 . - . intron_id 7 ; splice_site "ag" KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local cds 20000 20124 . - . KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local exon 20000 20124 . - . insertions 0 ; deletions 0 KQ750554.1:subseq(1179713,51104) exonerate:protein2genome:local similarity 20000 43113 737 - . alignment_id 1 ; Query SELENOU2.Anole ; Align 43114 13 42 ; Align 38013 27 27 ; Align 31243 36 6 ; Align 31081 38 78 ; Align 27245 64 69 ; Align 26196 87 54 ; Align 22844 105 105 ; Align 21332 141 129 ; Align 20123 185 123 # --- END OF GFF DUMP --- # -- completed exonerate analysis