Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOT.anole.fa -t SELENOT.extraccio.KQ745070.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000223_2.0 # Protein # Selenoprotein T (SELENOT) # Anole lizard 
        Target: KQ745070.1:subseq(797538,44002) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold618, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 780
   Query range: 0 -> 153
  Target range: 19999 -> 24002

     1 : PheLeuPheSerValSerUnkGlyTyrArgArgValPheGluGluTyrMetArgValIle :    20
         ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
         PheLeuPheSerValSer***GlyTyrArgArgValPheGluGluTyrMetArgValIle
 20000 : TTTCTGTTCAGTGTTTCCTGAGGATACAGGCGGGTGTTTGAGGAGTACATGCGGGTTATT : 20057

    21 : SerGlnArgTyrProAspIleArgIleGluGlyGluAsnTyrLeuProGlnProIleTyr :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerGlnArgTyrProAspIleArgIleGluGlyGluAsnTyrLeuProGlnProIleTyr
 20058 : AGCCAGCGGTACCCAGACATCCGCATTGAAGGAGAGAACTACCTTCCTCAACCTATTTAT : 20117

    41 : {Ar}  >>>> Target Intron 1 >>>>  {g}HisIleAlaSerPheLeuSerVal :    49
         {||}            777 bp           {|}||||||||||||||||||||||||
         {Ar}++                         ++{g}HisIleAlaSerPheLeuSerVal
 20118 : {AG}gt.........................ag{G}CATATAGCATCTTTCCTGTCAGTC : 20921

    50 : PheLysLeuValLeuIleGlyPheIleIleValGlyLysAspProPheAlaPhePheGly :    69
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         PheLysLeuValLeuIleGlyPheIleIleValGlyLysAspProPheAlaPhePheGly
 20922 : TTCAAACTAGTGTTAATAGGCTTCATTATTGTTGGCAAGGatccttttgctttctttggc : 20981

    70 : MetGlnAlaProSerIleTrpGlnTrpGlyGlnGluAsnLys  >>>> Target Intr :    84
         ||||||||||||||||||||||||||||||||||||||||||           2035 bp
         MetGlnAlaProSerIleTrpGlnTrpGlyGlnGluAsnLys++                
 20982 : ATGCAAGCTCCAAGTAtctggcagtggggccaagaaAATAAGgt................ : 21028

    85 : on 2 >>>>  ValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnG :   100
                    |||||||||||||||||||||||||||||||||||||||||||||||||
                  ++ValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnG
 21029 : .........agGTCTATGCTTGTATGATGGTTTTCTTCCTGAGCAACATGATTGAGAACC : 23109

   101 : lnCysMetSerThrGlyAlaPheGluIleThrPheAsn{A}  >>>> Target Intro :   113
         ||||||||||||||||||||||||||||||||!!.|||{|}            732 bp 
         lnCysMetSerThrGlyAlaPheGluIleThrLeuAsn{A}++                 
 23110 : AATGTATGTCAACAGGTGCATTTGAAATAACTTTAAAT{G}gt................. : 23151

   114 : n 3 >>>>  {sp}ValProValTrpSerLysLeuGluSerGlyHisLeuProSerMetG :   129
                   {||}||||||||||||||||||||||||||||||||||||||||||||||
                 ++{sp}ValProValTrpSerLysLeuGluSerGlyHisLeuProSerMetG
 23152 : ........ag{at}gtccCAGTATGGTCTAAGTTGGAGTCTGGTCACCTTCCTTCCATGC : 23928

   130 : lnGlnLeuValGlnIleLeuAspAsnGluMetLysLeuAsnValHisMetGluGlnMetP :   149
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||!!:|
         lnGlnLeuValGlnIleLeuAspAsnGluMetLysLeuAsnValHisMetGluGlnIleP
 23929 : AGCAGCTTGTTCAGATCCTTGATAATGAAATGAAACTCAATGTGCACATGGAGCAAATAC : 23988

   150 : roHisHisArgSer :   153
         ||||||||||||||
         roHisHisArgSer
 23989 : CGCATCATCGATCG : 24002

vulgar: SPP00000223_2.0 0 153 . KQ745070.1:subseq(797538,44002) 19999 24002 + 780 M 40 120 S 0 2 5 0 2 I 0 773 3 0 2 S 1 1 M 42 126 5 0 2 I 0 2031 3 0 2 M 29 87 S 0 1 5 0 2 I 0 728 3 0 2 S 1 2 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	gene	20000	24002	780	+	.	gene_id 1 ; sequence SPP00000223_2.0 ; gene_orientation +
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	cds	20000	20121	.	+	.	
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	exon	20000	20121	.	+	.	insertions 0 ; deletions 0
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	splice5	20122	20123	.	+	.	intron_id 1 ; splice_site "GT"
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	intron	20122	20898	.	+	.	intron_id 1
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	splice3	20897	20898	.	+	.	intron_id 0 ; splice_site "AG"
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	cds	20899	21025	.	+	.	
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	exon	20899	21025	.	+	.	insertions 0 ; deletions 0
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	splice5	21026	21027	.	+	.	intron_id 2 ; splice_site "GT"
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	intron	21026	23060	.	+	.	intron_id 2
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	splice3	23059	23060	.	+	.	intron_id 1 ; splice_site "AG"
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	cds	23061	23148	.	+	.	
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	exon	23061	23148	.	+	.	insertions 0 ; deletions 0
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	splice5	23149	23150	.	+	.	intron_id 3 ; splice_site "GT"
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	intron	23149	23880	.	+	.	intron_id 3
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	splice3	23879	23880	.	+	.	intron_id 2 ; splice_site "ag"
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	cds	23881	24002	.	+	.	
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	exon	23881	24002	.	+	.	insertions 0 ; deletions 0
KQ745070.1:subseq(797538,44002)	exonerate:protein2genome:local	similarity	20000	24002	780	+	.	alignment_id 1 ; Query SPP00000223_2.0 ; Align 20000 1 120 ; Align 20900 42 126 ; Align 23061 84 87 ; Align 23883 114 120
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis