Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOP1.anole.fa -t SELENOP1.extraccio.KQ756314.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000218_2.0 # Protein # Selenoprotein P (SELENOP) # Anole lizard 
        Target: KQ756314.1:subseq(1493712,44292) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold82, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 763
   Query range: 0 -> 177
  Target range: 19999 -> 24292

     1 : MetTrpAlaGlyLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProGlyGlyGlyThrGlu :    20
         ||||||!.!|||||||||||||||||||||||||||||||||||||||||||||||||||
         MetTrpValGlyLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProGlyGlyGlyThrGlu
 20000 : ATGTGGGTTGGGCTGGGCCTTGCCCTGGCTCTCTGTCTCCTCCCAGGAGGAGGGACGGAG : 20057

    21 : SerGlnGlyProSerThrArgCysLysGluProProAspTrpArgIleGlyGluGlnAsn :    40
         ||||||||| !!||| !!||||||||||||||||||!!:|||!.!||| !!|||:!!|||
         SerGlnGlySerSerProArgCysLysGluProProGluTrpHisIleArgGluGluAsn
 20058 : AGCCAGGGCTCCAGCCCCCGTTGTAAAGAACCTCCAGAATGGCACATCCGGGAGGAAAAC : 20117

    41 : ProMetLeuAspSerArgGlyPheValThrValValAlaLeuLeuGlnAlaSerUnkTyr :    60
         |||||||||||||||||||||! !||||||||||||||||||||||||||||||   |||
         ProMetLeuAspSerArgGlySerValThrValValAlaLeuLeuGlnAlaSer***Tyr
 20118 : CCGATGCTGGACTCCAGAGGTTCTGTAACAGTCGTGGCTCTTCTCCAAGCTAGCTGATAT : 20177

    61 : LeuCysLeuLeuGlnAlaSer{Ar}  >>>> Target Intron 1 >>>>  {g}Leu :    69
         |||||||||||||||||||||{||}           2531 bp           {|}|||
         LeuCysLeuLeuGlnAlaSer{Ar}++                         ++{g}Leu
 20178 : TTGTGCCTGCTCCAGGCTTCC{AG}gt.........................ag{G}CTG : 22735

    70 : GluAspLeuArgLeuLysLeuGluSerAspGlyLeuThrAsnValSerPheIleValVal :    89
         ||||||||||||||||||||||||!:!||||||!!!||||||:!!||||||:!:||||||
         GluAspLeuArgLeuLysLeuGluAsnAspGlyPheThrAsnIleSerPheValValVal
 22736 : GAAGACCTGCGACTGAAGCTGGAAAATGATGGATTTACCAATATCTCCTTTGTGGTAGTC : 22795

    90 : AsnHisGlnAlaGlnHisSerGlnGlnAsnPheHisHisLeuArgGluArgIleSerGlu :   109
         |||||||||!.!!    !||||||:!!!!.!:!! !||||||||||||!:!:!!||||||
         AsnHisGlnGlyProSerSerGlnLysLysTyrProHisLeuArgGluLysValSerGlu
 22796 : AACCACCAAGGGCCCAGTTCCCAGAAAAAGTATCCCCATCTGAGAGAGAAGGTTTCAGAG : 22855

   110 : AsnIleProValTyrGlnGlnAspThrLysGlnProAspValTrpThrLeuLeuAsnGly :   129
         |||||||||||||||||||||!    !!  ||||||||||||||||||:!!|||||||||
         AsnIleProValTyrGlnGlnGlyGluThrGlnProAspValTrpThrIleLeuAsnGly
 22856 : AACATTCCTGTGTACCAGCAGGGAGAGACCCAGCCTGATGTTTGGACTATTCTAAATGGA : 22915

   130 : LysLysAspAspPheLeuIleTyrAsp{Ar}  >>>> Target Intron 2 >>>>   :   139
         |||||||||||||||||||||||||||{||}           1231 bp           
         LysLysAspAspPheLeuIleTyrAsp{Ar}++                         ++
 22916 : AAGAAGGATGACTTCCTGATCTATGAC{AG}gt.........................ag : 24176

   140 : {g}CysGlyArgLeuValTyrHisLeuGlyLeuProTyrThrTyrLeuSerPheProTyr :   158
         {|}||||||||||||||||||||||||.!!|||||||||:!!!:!|||!!!|||||||||
         {g}CysGlyArgLeuValTyrHisLeuSerLeuProTyrSerPheLeuThrPheProTyr
 24177 : {G}TGTGGCCGTCTTGTGTATCATCTTAGTTTGCCTTACTCCTTTCTGACTTTCCCATAT : 24233

   159 : ValGluGlnAlaIleGlnLeuThrTyrCysGluSerLysCysGluAsnCysThrTyr :   177
         ||||||:!!|||||||||:!!|||||||||||||||! !|||! !||||||:!!|||
         ValGluGluAlaIleGlnValThrTyrCysGluSerThrCysGlyAsnCysSerTyr
 24234 : GTGGAAGAAGCCATTCAGGTTACATACTGTGAATCAACATGTGGAAACTGTTCTTAC : 24292

vulgar: SPP00000218_2.0 0 177 . KQ756314.1:subseq(1493712,44292) 19999 24292 + 763 M 67 201 S 0 2 5 0 2 I 0 2527 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 1227 3 0 2 S 1 1 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	gene	20000	24292	763	+	.	gene_id 1 ; sequence SPP00000218_2.0 ; gene_orientation +
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	cds	20000	20202	.	+	.	
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	exon	20000	20202	.	+	.	insertions 0 ; deletions 0
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	splice5	20203	20204	.	+	.	intron_id 1 ; splice_site "GT"
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	intron	20203	22733	.	+	.	intron_id 1
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	splice3	22732	22733	.	+	.	intron_id 0 ; splice_site "AG"
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	cds	22734	22946	.	+	.	
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	exon	22734	22946	.	+	.	insertions 0 ; deletions 0
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	splice5	22947	22948	.	+	.	intron_id 2 ; splice_site "GT"
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	intron	22947	24177	.	+	.	intron_id 2
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	splice3	24176	24177	.	+	.	intron_id 1 ; splice_site "AG"
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	cds	24178	24292	.	+	.	
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	exon	24178	24292	.	+	.	insertions 0 ; deletions 0
KQ756314.1:subseq(1493712,44292)	exonerate:protein2genome:local	similarity	20000	24292	763	+	.	alignment_id 1 ; Query SPP00000218_2.0 ; Align 20000 1 201 ; Align 22735 69 210 ; Align 24179 140 114
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis