Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOO.human.fa -t SELENOO.extraccio.KQ750079.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000081_2.0 # Protein # Selenoprotein O (SELENOO) # Human Target: KQ750079.1:subseq(194840,49758) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold283, whole genome shotgun sequence Model: protein2genome:local Raw score: 2186 Query range: 17 -> 669 Target range: 6654 -> 32024 18 : LeuProLeuGlyArgCysSerProSerProAlaProArgSerThrLeuSerGlyAlaAla : 37 |||||| ||| |||::: ...|||:::|||||| ||| ! !! LeuProGluGlyProProPheProThrTyrThrProLysSerThrSerValGlyAspPro 6655 : ttacctgagggaccgcctttccccacatatacccccaagagcacttcagtcggagACCCA : 6712 38 : MetGluPro{A} >>>> Target Intron 1 >>>> {la}ProArgTrpLeuAla : 46 ! |||{|} 13270 bp {||}! !|||||||||!.! ThrLeuPro{A}++ -+{la}LeuArgTrpLeuGly 6713 : ACactgcct{g}gt.........................gg{CT}CTTCGGTGGCTGGGG : 20009 47 : GlyLeuArgPheAspAsnArgAlaLeuArgAlaLeuProValGluAlaProProProGly : 66 !!!!|||||||||||||||||||||||||||||||||:!!!!: ||| !! ThrPheArgPheAspAsnArgAlaLeuArgAlaLeuProLeuAsp---------ProCys 20010 : ACGTTTCGCTTCGACAACCGCGCCTTGCGGGCTCTGCCGCTTGAC---------CCCTGC : 20060 67 : ProGluGlyAlaProSerAlaProArgProValProGlyAlaCysPheThrArgValGln : 86 !||| !:!!.!|||||| !!||| !!.!!|||||||||:!!||||||!:! GluGlu---------AsnValProArgAlaValAlaSerAlaCysPheSerArgValArg 20061 : GAGGAA---------AATGTGCCTCGGGCCGTGGCGAGTGCCTGCTTCTCCCGCGTGCGG : 20111 87 : ProThrProLeuArgGlnProArgLeuValAlaLeuSerGluProAlaLeuAlaLeuLeu : 106 |||||||||:!!!:!.!.|||!:!||||||||||||||| !|||||||||||||||||| ProThrProValGlnAsnProGlnLeuValAlaLeuSerLeuProAlaLeuAlaLeuLeu 20112 : CCTACCCCCGTGCAGAACCCGCAGCTCGTCGCCTTGTCGTTGCCGGCGCTGGCActgctg : 20171 107 : GlyLeuGlyAlaPro<-><->ProAlaArgGluAla<-><->GluAlaGluAlaAlaLeu : 122 |||||| ||| ||| !..!|||||| |||||||||||||||||| GlyLeuArgGluProArgThrProArgGluGluAlaGluLeuGluAlaGluAlaAlaLeu 20172 : gggctgagagagccgaGGACGCCGCGGGAGGAGGCCGAGCTGGAGGCCGAGGCCGCGCTC : 20231 123 : PhePheSerGlyAsnAlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysGly : 142 !:!|||||||||||| ! !|||||||||:!!||||||||||||||||||||||||||| TyrPheSerGlyAsnArgThrLeuProGlySerGluProAlaAlaHisCysTyrCysGly 20232 : TACTTCAGCGGCAACCGGACCCTGCCGGGCTCGGAGCCTGCAGCCCACTGCTACTGCGGC : 20291 143 : HisGlnPheGlyGlnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGlu : 162 ||||||||||||...||||||||||||||||||||||||||||||||||||||||||||| HisGlnPheGlySerPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGlu 20292 : CACCAGTTCGGCTCCTTCGCCGGGCAGCTGGGCGACGGCGCCGCCATGTACCTGGGTGAG : 20351 163 : ValCysThrAlaThrGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrPro : 182 ||| !.! !! !|||||||||||||||:!!||||||||||||||||||! !|||||| ValLeuAsnProArgGlyGluArgTrpGluIleGlnLeuLysGlyAlaGlyLeuThrPro 20352 : GTGCTGAACCCGCGCGGCGAGCGCTGGGAGATCCAGCTCAAAGGCGCCGGACTCACCCCC : 20411 183 : PheSer{Ar} >>>> Target Intron 2 >>>> {g}GlnAlaAspGlyArgLys : 191 ||||||{||} 3712 bp {|}|||||||||||||||||| PheSer{Ar}++ ++{g}GlnAlaAspGlyArgLys 20412 : TTCTCC{CG}gt.........................ag{G}CAAGCTGATGGTCGTAAA : 24150 192 : ValLeuArgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyVal : 211 |||||||||||||||||||||||||||||||||||||||!.!|||||||||||||||:!! ValLeuArgSerSerIleArgGluPheLeuCysSerGluGlyMetPheHisLeuGlyIle 24151 : GTTCTGCGATCAAGCATTAGAGAATTCCTTTGCAGCGAAGGAATGTTTCATCTAGGAATA : 24210 212 : ProThrThrArgAlaGlyAlaCysValThrSerGluSerThrValValArgAspValPhe : 231 ||||||||||||||||||.!!||||||||||||!!:||| !|||:!!||||||:!!||| ProThrThrArgAlaGlyThrCysValThrSerAspSerGluValIleArgAspIlePhe 24211 : CCCACAACCCGAGCAGGAACATGTGTAACATCCGATTCAGAGGTTATTCGGGATATATTT : 24270 232 : TyrAspGlyAsnProLysTyrGluGlnCysThrValValLeuArgValAlaSerThrPhe : 251 |||||||||||||||||| ! |||:!!||||||||||||||||||:!!||| !!|||||| TyrAspGlyAsnProLysLysGluLysCysThrValValLeuArgIleAlaProThrPhe 24271 : TATGATGGAAATCCAAAAAAAGAGAAGTGCACTGTTGTCCTAAGAATCGCACCAACATTT : 24330 252 : Ile{Ar} >>>> Target Intron 3 >>>> {g}PheGlySerPheGluIlePhe : 260 |||{||} 1215 bp {|}||||||||||||||||||||| Ile{Ar}++ ++{g}PheGlySerPheGluIlePhe 24331 : ATC{AG}gt.........................ag{g}TTTGGATCGTTTGAAATTTTT : 25572 261 : LysSerAlaAspGluHisThrGlyArgAlaGlyProSerValGlyArgAsnAspIleArg : 280 ||| !! !!||||||:!!||||||||| !||||||||||||..!||||||!!:|||||| LysProProAspGluTyrThrGlyArgLysGlyProSerValAsnArgAsnGluIleArg 25573 : AAGCCTCCTGATGAATACACTGGACGTAAAGGCCCGAGTGTTAACAGAAATGAAATTCGA : 25632 281 : ValGlnLeuLeuAspTyrValIleSerSerPheTyrProGluIleGlnAlaAlaHisAla : 300 :!!|||:!!||||||||||||||||||!!!|||||||||||||||! ! !|||||| !! IleGlnMetLeuAspTyrValIleSerThrPheTyrProGluIleLeuGlnAlaHisPro 25633 : ATACAAATGCTTGATTATGTGATCAGCACGTTTTATCCAGAGATTCTGCAAGCACACCCT : 25692 301 : SerAspSerValGlnArgAsnAlaAlaPhePheArgGlu >>>> Target Intron : 314 ..!:!!!:!:!!||||||||||||||||||||||||||| 1795 bp AspAsnAsnIleGlnArgAsnAlaAlaPhePheArgGlu++ 25693 : GACAATAATATTCAAAGGAATGCAGCTTTTTTCAGAGAGgt................... : 25736 315 : 4 >>>> ValThrArgArgThrAlaArgMetValAlaGluTrpGlnCysValGlyPheC : 331 |||||| !||||||||||||||||||||||||||||||||||||||||||| ++ValThrLeuArgThrAlaArgMetValAlaGluTrpGlnCysValGlyPheC 25737 : ......agGTAACATTGCGGACAGCAAGGATGGTTGCAGAATGGCAGTGTGTTGGATTTT : 27580 332 : ysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLeuThrIleAspTyrGlyP : 351 |||||||||||||||||||||||||||||||||||:!!|||||||||||||||||||||| ysHisGlyValLeuAsnThrAspAsnMetSerIleValGlyLeuThrIleAspTyrGlyP 27581 : GTCATGGCGTGCTCAATACTGATAATATGAGCATAGTTGGTCTTACAATTGACTATGGAC : 27640 352 : roPheGlyPheLeuAsp{Ar} >>>> Target Intron 5 >>>> {g}TyrAspP : 360 |||||||||||:!!|||{||} 459 bp {|}||||||| roPheGlyPheMetAsp{Ar}++ ++{g}TyrAspP 27641 : CTTTTGGATTTATGGAC{AG}gt.........................ag{A}TATGATC : 28126 361 : roAspHisValCysAsnAlaSerAspAsnThrGlyArgTyrAlaTyrSerLysGlnProG : 380 ||!!:|||:!!||||||!.!|||||||||||||||||||||||||||!:!|||||||||| roGluHisIleCysAsnGlySerAspAsnThrGlyArgTyrAlaTyrAsnLysGlnProG 28127 : CTGAACACATTTGCAATGGGTCTGATAACACTGGACGTTATGCCTATAATAAGCAACCAG : 28186 381 : luValCysArgTrpAsnLeuArgLysLeuAlaGluAlaLeuGlnProGluLeuProLeuG : 400 ||:!!|||!:!||||||||| !!|||||||||||||||||| |||||||||||||||: luIleCysLysTrpAsnLeuGlyLysLeuAlaGluAlaLeuValProGluLeuProLeuA 28187 : AAATCTGCAAATGGAATCTTGGAAAACTTGCTGAAGCTTTagttccagaactgcccttgg : 28246 401 : luLeuGlyGluAlaIleLeuAlaGluGluPheAspAlaGluPheGlnArgHisTyrLeuG : 420 :::!!.!! ! !!||||||! !||||||!:!:!!|||||||||:!! !||||||:!!| spIleSerMetProIleLeuGluGluGluTyrAsnAlaGluPheGluAlaHisTyrMetG 28247 : aTATCAGTATGCCCATTCTAGAAGAAGAATATAACGCAGAATTTGAGGCACATTATATGC : 28306 421 : lnLysMetArgArgLysLeuGlyLeuValGlnValGluLeuGluGluAspGlyAlaLeuV : 440 || !||||||||||||||||||!!!:!!|||:!!:!!||||||!!:|||..! !|||| lnLeuMetArgArgLysLeuGlyPheIleGlnLeuGlnLeuGluAspAspAsnLysLeuV 28307 : AACTAATGAGAAGGAAGCTAGGATTCATTCAGCTCCAGCTAGAAGATGATAATAAACTCG : 28366 441 : alSerLysLeuLeuGluThrMetHisLeuThr{G} >>>> Target Intron 6 >> : 451 ||||| ! ||||||||||||||||||:!!|||{|} 766 bp alSerAspLeuLeuGluThrMetHisValThr{G}++ 28367 : TATCTGATCTTTTAGAAACTATGCACGTCACA{G}gt....................... : 28402 452 : >> {ly}AlaAspPheThrAsnThrPheTyrLeuLeuSerSerPheProValGluLeuG : 469 {||}||||||||||||||||||||| !||||||||||||||| !!|||.!.! !! ++{ly}AlaAspPheThrAsnThrPheArgLeuLeuSerSerPheSerValAsnSerA 28403 : ..ag{GG}GCAGATTTTACAAACACTTTCCGCTTGCTGAGCTCCTTCTCAGTAAACTCTG : 29219 470 : luSerProGlyLeuAlaGluPheLeuAlaArgLeuMetGluGlnCysAlaSerLeuGluG : 489 !: !! !!..!|||! !.!.||||||! !!:!:!! :!!||||||||||||:!!|||| spProSerSerLeuGluAsnPheLeuAspLysIleSerLysGlnCysAlaSerIleGluG 29220 : ATCCTTCATCACTGGAAAACTTCTTAGATAAGATTTCAAAGCAATGTGCTTCTATAGAAG : 29279 490 : luLeuArgLeuAlaPheArgProGlnMetAspPro{Ar} >>>> Target Intron : 501 |||||!:!:!!|||!:!!:!|||||||||||||||{||} 255 bp luLeuLysValAlaTyrLysProGlnMetAspPro{Ar}++ 29280 : AACTGAAAGTTGCTTACAAGCCTCAAATGGAtccc{ag}gt................... : 29319 502 : 7 >>>> {g}GlnLeuSerMetMetLeuMetLeuAlaGlnSerAsnProGlnLeuPheA : 518 {|}||||||||||||||||||||||||||||||||||||||||||||||||| ++{g}GlnLeuSerMetMetLeuMetLeuAlaGlnSerAsnProGlnLeuPheA 29320 : ......ag{A}CAACTTTCAATGATGCTGATGCTAGCACAGTCTAACCCACAGCTCTTTG : 29621 519 : laLeuMetGlyThrArgAlaGlyIleAlaArgGluLeuGluArgValGluGlnGlnSerA : 538 |||||!!:||||||!:!:!!..!||| !!:!||||||||||||:!!|||||| |||! laLeuIleGlyThrLysSerAsnIleAsnLysGluLeuGluArgIleGluGlnPheSerL 29622 : CCTTAATTGGAACAAAATCCAACATAAATAAAGAATTGGAACGCATTGAGCAGTTCTCTA : 29681 539 : rgLeuGluGlnLeuSerAlaAlaGluLeuGlnSerArgAsnGlnGlyHisTrpAlaAspT : 558 :!|||:!!|||||||||||||||||||||! |||||||||:!!||||||||| !|||| ysLeuGlnGlnLeuSerAlaAlaGluLeuLeuSerArgAsnLysGlyHisTrpLysAspT 29682 : AGCTGCAGCAGTTATCAGCAGCTGAATTGCTCAGCAGAAATAAAGGACATTGGAAAGACT : 29741 559 : rpLeuGlnAlaTyr{Ar} >>>> Target Intron 8 >>>> {g}AlaArgLeuA : 567 |||||! ! !|||{||} 462 bp {|}!.!||||||! rpLeuLeuAsnTyr{Ar}++ ++{g}ValArgLeuG 29742 : GGCTGCTGAATTAC{AG}gt.........................ag{A}GTTCGGCTAG : 30230 568 : spLysAspLeuGluGlyAlaGlyAspAlaAlaAlaTrpGlnAlaGluHisValArgValM : 587 !:|||!!:|||||| !.!!.!!||||||!.!||||||...||||||!.!|||!:!|||| luLysGluLeuGluHisThrSerAspAlaGlyAlaTrpSerAlaGluArgValLysValM 30231 : AAAAAGAATTAGAACACACTAGTGATGCTGGTGCTTGGAGTGCTGAACGTGTGAAGGTTA : 30290 588 : etHisAlaAsnAsnProLysTyrValLeuArgAsnTyrIleAlaGlnAsnAlaIleGluA : 607 ||:!! !|||||||||||||||:!!|||||||||||||||||||||||||||||||||| etAsnLeuAsnAsnProLysTyrIleLeuArgAsnTyrIleAlaGlnAsnAlaIleGluA 30291 : TGAATTTAAACAATCCAAAATACATCTTGAGAAATTACATTGCTCAAAATGCTATAGAGG : 30350 608 : laAlaGluArgGlyAspPheSerGlu >>>> Target Intron 9 >>>> ValAr : 617 ||||||||!.!||||||||||||||| 1465 bp |||!: laAlaGluAsnGlyAspPheSerGlu++ ++ValGl 30351 : CCGCAGAAAATGGTGATTTCTCAGAGgt.........................agGTACA : 31845 618 : gArgValLeuLysLeuLeuGluThrProTyrHisCysGluAlaGlyAlaAlaThrAspAl : 637 !!:!||||||||||||||||||! !|||||| |||! ! !! !..! !! !! nLysValLeuLysLeuLeuGluLysProTyr------GluAspThrGluCysTyrGlyGl 31846 : GAAAGTCTTGAAGCTCTTAGAAAAGCCATAT------GAAGACACAGAATGTTACGGTGA : 31899 638 : aGluAlaThrGluAlaAspGly >>>> Target Intron 10 >>>> AlaAspGl : 647 !||| ...||| ::: 30 bp .!!..!.! uGluProAlaGluGluGluGlu++ -+ThrSerSe 31900 : GGAAcctgcagaggaagaagaggt..........................tgACCAGTAG : 31959 648 : yArgGlnArgSerTyrSerSerLysProProLeuTrpAlaAlaGluLeuCysValThrUn : 667 !||| ! ! !!|||||||||||||||||||||||||||:!!||||||||||||||| rArg---LeuProTyrSerSerLysProProLeuTrpAlaSerGluLeuCysValThr** 31960 : CAGG---CTTCCATACAGTAGTAAACCACCCCTCTGGGCTTCTGAGCTCTGTGTCACATG : 32016 668 : kSerSer : 669 |||||| *SerSer 32017 : ATCTTCA : 32024 vulgar: SPP00000081_2.0 17 669 . KQ750079.1:subseq(194840,49758) 6654 32024 + 2186 M 23 69 S 0 1 5 0 2 I 0 13266 3 0 2 S 1 2 M 20 60 G 3 0 M 4 12 G 3 0 M 40 120 G 0 6 M 5 15 G 0 6 M 68 204 S 0 2 5 0 2 I 0 3708 3 0 2 S 1 1 M 67 201 S 0 2 5 0 2 I 0 1211 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1791 3 0 2 M 43 129 S 0 2 5 0 2 I 0 455 3 0 2 S 1 1 M 93 279 S 0 1 5 0 2 I 0 762 3 0 2 S 1 2 M 49 147 S 0 2 5 0 2 I 0 251 3 0 2 S 1 1 M 61 183 S 0 2 5 0 2 I 0 458 3 0 2 S 1 1 M 52 156 5 0 2 I 0 1461 3 0 2 M 12 36 G 2 0 M 15 45 5 0 2 I 0 26 3 0 2 M 4 12 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-20 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local gene 6655 32024 2186 + . gene_id 1 ; sequence SPP00000081_2.0 ; gene_orientation + KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 6655 6724 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 6655 6724 . + . insertions 0 ; deletions 0 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 6725 6726 . + . intron_id 1 ; splice_site "gt" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 6725 19994 . + . intron_id 1 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 19993 19994 . + . intron_id 0 ; splice_site "GG" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 19995 20421 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 19995 20421 . + . insertions 12 ; deletions 6 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 20422 20423 . + . intron_id 2 ; splice_site "GT" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 20422 24133 . + . intron_id 2 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 24132 24133 . + . intron_id 1 ; splice_site "AG" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 24134 24337 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 24134 24337 . + . insertions 0 ; deletions 0 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 24338 24339 . + . intron_id 3 ; splice_site "GT" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 24338 25552 . + . intron_id 3 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 25551 25552 . + . intron_id 2 ; splice_site "ag" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 25553 25733 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 25553 25733 . + . insertions 0 ; deletions 0 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 25734 25735 . + . intron_id 4 ; splice_site "GT" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 25734 27528 . + . intron_id 4 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 27527 27528 . + . intron_id 3 ; splice_site "AG" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 27529 27659 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 27529 27659 . + . insertions 0 ; deletions 0 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 27660 27661 . + . intron_id 5 ; splice_site "GT" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 27660 28118 . + . intron_id 5 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 28117 28118 . + . intron_id 4 ; splice_site "AG" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 28119 28399 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 28119 28399 . + . insertions 0 ; deletions 0 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 28400 28401 . + . intron_id 6 ; splice_site "GT" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 28400 29165 . + . intron_id 6 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 29164 29165 . + . intron_id 5 ; splice_site "AG" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 29166 29316 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 29166 29316 . + . insertions 0 ; deletions 0 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 29317 29318 . + . intron_id 7 ; splice_site "gt" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 29317 29571 . + . intron_id 7 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 29570 29571 . + . intron_id 6 ; splice_site "AG" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 29572 29757 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 29572 29757 . + . insertions 0 ; deletions 0 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 29758 29759 . + . intron_id 8 ; splice_site "GT" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 29758 30219 . + . intron_id 8 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 30218 30219 . + . intron_id 7 ; splice_site "AG" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 30220 30376 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 30220 30376 . + . insertions 0 ; deletions 0 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 30377 30378 . + . intron_id 9 ; splice_site "GT" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 30377 31841 . + . intron_id 9 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 31840 31841 . + . intron_id 8 ; splice_site "AG" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 31842 31922 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 31842 31922 . + . insertions 0 ; deletions 2 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice5 31923 31924 . + . intron_id 10 ; splice_site "gt" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local intron 31923 31952 . + . intron_id 10 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local splice3 31951 31952 . + . intron_id 9 ; splice_site "TG" KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local cds 31953 32024 . + . KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local exon 31953 32024 . + . insertions 0 ; deletions 1 KQ750079.1:subseq(194840,49758) exonerate:protein2genome:local similarity 6655 32024 2186 + . alignment_id 1 ; Query SPP00000081_2.0 ; Align 6655 18 69 ; Align 19997 42 60 ; Align 20057 65 12 ; Align 20069 72 120 ; Align 20195 112 15 ; Align 20216 117 204 ; Align 24135 186 201 ; Align 25554 254 180 ; Align 27529 314 129 ; Align 28120 358 279 ; Align 29168 452 147 ; Align 29573 502 183 ; Align 30221 564 156 ; Align 31842 616 36 ; Align 31878 630 45 ; Align 31953 645 12 ; Align 31965 650 60 # --- END OF GFF DUMP --- # -- completed exonerate analysis