Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENON.anole.fa -t SELENON.extraccio.KQ750069.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000214_2.0 # Protein # Selenoprotein N (SELENON) # Anole lizard Target: KQ750069.1:subseq(1142359,70932) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold62, whole genome shotgun sequence Model: protein2genome:local Raw score: 2225 Query range: 0 -> 492 Target range: 19999 -> 50932 1 : GluThrAlaLeuLysSerLeuGlyAsnGluGlyLeuPheLeuPheSerSerLeuAspThr : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GluThrAlaLeuLysSerLeuGlyAsnGluGlyLeuPheLeuPheSerSerLeuAspThr 20000 : GAGACGGCTCTGAAATCTCTGGGAAATGAaggcctctttctcttctcctccctggATACT : 20057 21 : AsnAsnAspLeuTyrIleSerProGluGluPheLysProIleAlaGluLysLeuThr{G} : 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||{|} AsnAsnAspLeuTyrIleSerProGluGluPheLysProIleAlaGluLysLeuThr{G} 20058 : AACAATGATTTGTACATCAGCCCTGAAGAGTTTAAGCCAATTGCGGAGAAACTTACA{G} : 20117 41 : >>>> Target Intron 1 >>>> {ly}IleAlaProValSerGlyThrAsp<-> : 49 1631 bp {||}|||.!!! !:!!|||!.! ||| ++ ++{ly}IleThrHisIleSerAlaLeuAspGlu 20118 : gt.........................ag{GC}ATTACTCATATCTCTGCCCTtgacgaa : 21775 50 : GluGluGluValProAspProAsnGlyGluThrLeuSerIleLeuAlaLysPheGlnPro : 68 |||||||||||| !|||||||||||||||! !||||||:!!:!!||||||||||||||| GluGluGluValLeuAspProAsnGlyGluMetLeuSerLeuIleAlaLysPheGlnPro 21776 : gaagaggaggtgtTGGATCCCAATGGAGAGATGCTCTCCCTCATCGCAAAATTCCAGCCT : 21835 69 : LeuLeuMetGluThrMetThrLysSerLysAspGlyPheLeuGly >>>> Target I : 84 ||||||||||||||||||||||||||||||||||||||||||||| 2199 LeuLeuMetGluThrMetThrLysSerLysAspGlyPheLeuGly++ 21836 : CTGTTAATGGAAACCATGACAAAGAGCAAGGACGGGTTCCTTGGAgt............. : 21885 85 : ntron 2 >>>> ValSerHisLeuSerLeuSerGlyLeuArgAsnTrpThrAlaProA : 99 bp :!!|||||| !:!!||||||||||||||||||||||||||||||| ++IleSerHisGluAlaLeuSerGlyLeuArgAsnTrpThrAlaProA 21886 : ............agATTTCACACGAGGCCCTTTCTGGGCTTCGTAACTGGACGGCTCCAG : 24127 100 : laSerProValSerValMetPheAlaGlnGlnPheLysAlaPheLeuProProLysHisL : 119 ||||||||:!!|||:!!|||.!!||||||||||||||||||||||||||| !!|||:!!| laSerProMetSerMetMetLeuAlaGlnGlnPheLysAlaPheLeuProSerLysAsnL 24128 : CTTCCCCAATGAGCATGATGCTTGCCCAGCAATTCAAGGCCTTCCTCCCATCAAAGAATA : 24187 120 : ysValGluLeuAlaAspProTrpTrpIleIleProSerGluLeuAsnIlePheThrGlyT : 139 ||:!!||||||!.!|||||||||||||||||||||||||||||||||||||||||||||| ysLeuGluLeuGlyAspProTrpTrpIleIleProSerGluLeuAsnIlePheThrGlyT 24188 : AACTAGAACTGGGTGATCCTTGGTGGATAATTCCCAGTGAATTAAACATCTTTACTGGAT : 24247 140 : yrLeuProAsnAsnArgPheTyrProProAlaProArgGlyLysGlu >>>> Target : 155 |||||||||||||||||||||||||||||||||||!:!||||||||| 8 yrLeuProAsnAsnArgPheTyrProProAlaProLysGlyLysGlu++ 24248 : ACCTTCCCAATAATcgtttttaccctccagctcctAAGGGTAAAGAGgt........... : 24297 156 : Intron 3 >>>> ValIleIleHisLysLeuLeuSerMetPheHisProArgProPh : 169 91 bp :!!|||:!!||||||||||||||||||||||||! !|||||||| ++IleIleValHisLysLeuLeuSerMetPheHisGlnArgProPh 24298 : ..............agATCATCGTTCACAAGCTCTTGAGTATGTTCCATCAGCGGCCATT : 25228 170 : eValLysThrArgPheAlaProGlnGlyAlaValAlaCysIleGlnAlaValAlaAspPh : 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||!!:|| eValLysThrArgPheAlaProGlnGlyAlaValAlaCysIleGlnAlaValAlaGluPh 25229 : TGTGAAAACCCGCTTTGCTCCTCAGGGGGCAGTCGCTTGCATTCAGGCAGTGGCTGAGTT : 25288 190 : eTyrTyrArgIleAlaPhe{Ar} >>>> Target Intron 4 >>>> {g}IleHi : 198 |||||||!:!|||||||||{||} 3637 bp {|}||||| eTyrTyrLysIleAlaPhe{Ar}++ ++{g}IleHi 25289 : CTACTACAAGATAGCCTTC{AG}gt.........................ag{G}ATCCA : 28952 199 : sAlaGluPheGlnLeuAsnGluProProAspPheProPheTrpPheSerProAlaGlnPh : 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sAlaGluPheGlnLeuAsnGluProProAspPheProPheTrpPheSerProAlaGlnPh 28953 : TGCTGAATTCCAGCTCAATGAGCCTCCAGATTTTCCCTTCTGGTTTTCTCCTGCCCAGTT : 29012 219 : eThrGlyTyrIleValLeuSerLysAspSerSerHisValArgGluPheLysLeuPheVa : 238 |||||||||||||:!!||||||||||||||||||||||||||||||||||||||| !|| eThrGlyTyrIleIleLeuSerLysAspSerSerHisValArgGluPheLysLeuAlaVa 29013 : CACTGGCTACATCATCCTCTCCAAAGACTCCTCCCATGTTCGGGAATTCAAGCTGGCTGT : 29072 239 : lProAsnAsn{Ar} >>>> Target Intron 5 >>>> {g}SerLeuAsnValAs : 247 ||||||||||{||} 7352 bp {|}|||||||||||||| lProAsnAsn{Ar}++ ++{g}SerLeuAsnValAs 29073 : TCCTAACAAC{AG}gt.........................ag{G}TCTCTTAACGTAGA : 36451 248 : pMetGluTrpLeuTyrGlyAlaLeuGluSerSerAsnMetGluValAspIleGlyTyrLe : 267 ||||||||||||||||||||||! !||||||||||||||||||||||||||||||||||| pMetGluTrpLeuTyrGlyAlaArgGluSerSerAsnMetGluValAspIleGlyTyrLe 36452 : CATGGAATGGCTATATGGGGCTCGAGAGAGCAGCAACATGGAGGTGGATATAGGATACCT : 36511 268 : uProGln >>>> Target Intron 6 >>>> MetGluLeuGluSerLeuGlyPro : 277 ||||||| 5839 bp |||||||||||||||||||||||| uProGln++ ++MetGluLeuGluSerLeuGlyPro 36512 : CCCTCAGgt.........................agATGGAGCTGGAGTCTTTGGGACCG : 42380 278 : SerValProSerIleIleHisAspGluAsnGlyAsnValIleAspSerArg<-><->Glu : 295 |||:!!||||||:!!|||||||||||||||||||||||||||:!!|||||| ||| SerIleProSerValIleHisAspGluAsnGlyAsnValIleAsnSerArgAspHisGlu 42381 : TCCATCCCTTCCGTTATCCACGATGAAAATGGGAATGTGATTAACAGCAGAGACCACGAA : 42440 296 : GlyAspProIleGlnPheValPheGluGluIleAlaTrpGlnArgGluIleAsnTrpGlu : 315 |||!!:||||||||||||:!!||||||||||||::!|||:!!!:!||||||!.!|||||| GlyGluProIleGlnPheIlePheGluGluIleSerTrpLysGlnGluIleThrTrpGlu 42441 : GGGGAACCCATTCAGTTCATATTTGAAGAGATCAGCTGGAAGCAAGAAATAACTTGGGAA : 42500 316 : GluAlaValArgLysLeuGluIleAlaMetTyrProPheLysLys >>>> Target I : 331 ||||||!.!!.!|||||||||:!!||||||||||||||||||||| 2193 GluAlaAlaHisLysLeuGluValAlaMetTyrProPheLysLys++ 42501 : GAGGCAGCCCACAAGCTGGAAGTTGCTATGTATCCATTTAAGAAAgt............. : 42550 332 : ntron 7 >>>> ValSerTyrLeuProPheThrArgAlaPheGluArgAlaLysSerG : 346 bp |||||||||!!! !!||||||!:!|||||||||||||||||||||| ++ValSerTyrPheSerPheThrGlnAlaPheGluArgAlaLysSerG 42551 : ............agGTTTCCTACTTTTCTTTTACCCAAGCTTTTGAAAGGGCAAAATCTG : 44786 347 : luSerLysLeuValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSerCysUnk{ : 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| { luSerLysLeuValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSerCys***{ 44787 : AGAGCAAACTGGTGCACTCcatcctgttgtggggagcgctAGATGATCAGTCGTGCTGA{ : 44846 367 : G} >>>> Target Intron 8 >>>> {ly}SerGlyArgThrLeuArgGluThrV : 375 |} 3321 bp {||}||||||||||||||||||||||||| G}++ ++{ly}SerGlyArgThrLeuArgGluThrV 44847 : G}gt.........................ag{GT}TCAGGGCGAACTCTCCGGGAAACCG : 48194 376 : alLeuGluSerSerProIleLeuAlaPheLeuAsnGluSerPheIleSerThrTrpSerL : 395 ||||||||||||||||||||||||||!!.||||||||||||||||||||||||||||||| alLeuGluSerSerProIleLeuAlaLeuLeuAsnGluSerPheIleSerThrTrpSerL 48195 : TCCTGGAAAGTTCGCCCATCCTTGCTTTGCTGAATGAGAGTTTCATCAGTACCTGGTCAT : 48254 396 : euValLysGluLeuGluAspLeuGln >>>> Target Intron 9 >>>> AlaLy : 405 |||||||||||||||||||||||||| 1182 bp ||||| euValLysGluLeuGluAspLeuGln++ ++AlaLy 48255 : TGGTGAAGGAACTAGAAGACTTACAGgt.........................agGCCAA : 49466 406 : sArgGluAspGluPheAsnSerArgLeuAlaAspLeuHisLeuGluLysTyrAsnPhePr : 425 |!:!|||:!!|||!!.!:!|||!:!||||||!!:||||||||||||||||||!:!||||| sLysGluAsnGluLeuSerSerLysLeuAlaGluLeuHisLeuGluLysTyrSerPhePr 49467 : GAAAGAGAATGAGTTAAGCAGCAAACTTGCAGAGCTACACCTCGAGAAGTACAGTTTCCC : 49526 426 : oValGluIleMetIleCysLeuProAsnGlyThrVal >>>> Target Intron 10 : 438 ||||||||||||||||||||||||||||||||||||| 1203 bp oValGluIleMetIleCysLeuProAsnGlyThrVal++ 49527 : CGTGGAAATAATGATCTGCTTGCCCAATGGCACTGTGgt..................... : 49567 439 : >>>> ValHisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerMetLysProGl : 455 |||||||||||||||||||||:!!||||||||||||||||||||||||||||| ++ValHisHisIleAsnAlaAsnHisPheLeuAspIleThrSerMetLysProGl 49568 : .....agGTACATCACATCAATGCCAATCACTTTCTGGATATTACTTCTATGAAGCCCGA : 50819 456 : uGluValGluSerSerIlePheSerPheSerThrSerPheGluAspProSerThrAlaTh : 475 ||||:!!||||||.!!|||||||||||||||.!!|||||||||||||||||||||||||| uGluIleGluSerGlyIlePheSerPheSerAlaSerPheGluAspProSerThrAlaTh 50820 : AGAAATTGAGAGCGGCATCTTCAGTTTCTCTGCCAGTTTTGAAGATCCCTCGACAGCAAC : 50879 476 : rTyrLeuGlnPheLeuLysGluGlyLeuGlnLysAlaLysProPheLeuGln : 492 |||||||||||||||||||||||||||||||||||||||||||.!!|||||| rTyrLeuGlnPheLeuLysGluGlyLeuGlnLysAlaLysProLeuLeuGln 50880 : CTACCTCCAGTTCCTGAAGGAAGGACTTCAGAAAGCAAAACCACTCCTGCAG : 50932 vulgar: SPP00000214_2.0 0 492 . KQ750069.1:subseq(1142359,70932) 19999 50932 + 2225 M 39 117 S 0 1 5 0 2 I 0 1627 3 0 2 S 1 2 M 8 24 G 0 3 M 35 105 5 0 2 I 0 2195 3 0 2 M 71 213 5 0 2 I 0 887 3 0 2 M 41 123 S 0 2 5 0 2 I 0 3633 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 7348 3 0 2 S 1 1 M 27 81 5 0 2 I 0 5835 3 0 2 M 25 75 G 0 6 M 36 108 5 0 2 I 0 2189 3 0 2 M 35 105 S 0 1 5 0 2 I 0 3317 3 0 2 S 1 2 M 37 111 5 0 2 I 0 1178 3 0 2 M 34 102 5 0 2 I 0 1199 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-11 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local gene 20000 50932 2225 + . gene_id 1 ; sequence SPP00000214_2.0 ; gene_orientation + KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 20000 20117 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 20000 20117 . + . insertions 0 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 20118 20119 . + . intron_id 1 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 20118 21748 . + . intron_id 1 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 21747 21748 . + . intron_id 0 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 21749 21882 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 21749 21882 . + . insertions 3 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 21883 21884 . + . intron_id 2 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 21883 24081 . + . intron_id 2 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 24080 24081 . + . intron_id 1 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 24082 24294 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 24082 24294 . + . insertions 0 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 24295 24296 . + . intron_id 3 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 24295 25185 . + . intron_id 3 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 25184 25185 . + . intron_id 2 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 25186 25310 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 25186 25310 . + . insertions 0 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 25311 25312 . + . intron_id 4 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 25311 28947 . + . intron_id 4 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 28946 28947 . + . intron_id 3 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 28948 29085 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 28948 29085 . + . insertions 0 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 29086 29087 . + . intron_id 5 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 29086 36437 . + . intron_id 5 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 36436 36437 . + . intron_id 4 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 36438 36519 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 36438 36519 . + . insertions 0 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 36520 36521 . + . intron_id 6 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 36520 42358 . + . intron_id 6 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 42357 42358 . + . intron_id 5 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 42359 42547 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 42359 42547 . + . insertions 6 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 42548 42549 . + . intron_id 7 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 42548 44740 . + . intron_id 7 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 44739 44740 . + . intron_id 6 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 44741 44846 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 44741 44846 . + . insertions 0 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 44847 44848 . + . intron_id 8 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 44847 48167 . + . intron_id 8 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 48166 48167 . + . intron_id 7 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 48168 48280 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 48168 48280 . + . insertions 0 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 48281 48282 . + . intron_id 9 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 48281 49462 . + . intron_id 9 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 49461 49462 . + . intron_id 8 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 49463 49564 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 49463 49564 . + . insertions 0 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice5 49565 49566 . + . intron_id 10 ; splice_site "GT" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local intron 49565 50767 . + . intron_id 10 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local splice3 50766 50767 . + . intron_id 9 ; splice_site "AG" KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local cds 50768 50932 . + . KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local exon 50768 50932 . + . insertions 0 ; deletions 0 KQ750069.1:subseq(1142359,70932) exonerate:protein2genome:local similarity 20000 50932 2225 + . alignment_id 1 ; Query SPP00000214_2.0 ; Align 20000 1 117 ; Align 21751 41 24 ; Align 21778 49 105 ; Align 24082 84 213 ; Align 25186 155 123 ; Align 28949 197 135 ; Align 36439 243 81 ; Align 42359 270 75 ; Align 42440 295 108 ; Align 44741 331 105 ; Align 48170 367 111 ; Align 49463 404 102 ; Align 50768 438 165 # --- END OF GFF DUMP --- # -- completed exonerate analysis