Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOI1.anole.fa -t SELENOI1.extraccio.KQ751719.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000212_2.0 # Protein # Selenoprotein I (SELENOI) # Anole lizard 
        Target: KQ751719.1:subseq(544966,42721) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold63, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 579
   Query range: 0 -> 167
  Target range: 19999 -> 22721

     1 : ArgAlaTyrLysSerLysThrLeuLysHisArgSerAlaTyrGluAlaLeuLeuProPhe :    20
         |||||||||..!!:!|||||||||||||||  !|||  !|||||||||:!!|||||||||
         ArgAlaTyrSerAsnLysThrLeuLysHisAspSerPheTyrGluAlaMetLeuProPhe
 20000 : AGAGCCTACTCAAACAAAACGTTGAAGCATGACTCCTTTTACGAGGCGATGCTGCCTTTT : 20057

    21 : LeuSerProValLeuLeuPheAlaLeuCysSerAlaTrpIlePheTrpSerProThrAsp :    40
         |||||||||||||||||||||!.!||||||!!!!.!|||||||||  !||||||:!!|||
         LeuSerProValLeuLeuPheValLeuCysThrValTrpIlePheGlnSerProSerAsp
 20058 : CTCTCGCCGGTGCTGCTCTTCGTCTTGTGCACCGTCTGGATCTTCCAGTCACCATCAGAC : 20117

    41 : IleLeuGluAlaHisProArgLeuPheTyrPheMetValGlyThrAlaPheAlaAsnIle :    60
         |||||||||!.!|||||||||||||||||||||||| !!|||||||||||||||||||||
         IleLeuGluValHisProArgLeuPheTyrPheMetPheGlyThrAlaPheAlaAsnIle
 20118 : ATCCTGGAGGTCCACCCTCGCCTCTTTTACTTCATGTTCGGGACAGCGTTTGCTAATATT : 20177

    61 : Ser  >>>> Target Intron 1 >>>>  CysArgLeuIleValCysGlnMetSerS :    71
         |||           2120 bp           ||||||||||||||||||||||||||||
         Ser++                         ++CysArgLeuIleValCysGlnMetSerS
 20178 : TCGgt.........................agTGTCGGCTGATCGTCTGCCAGATGAGCA : 22330

    72 : erThrArgCysGlnProLeuAsnIleLeuLeuLeuProLeuAlaLeuAlaIleLeuAlaV :    91
         |||||||||||||||||||||||   :!!||||||||||||!.!|||!.!:!!|||!.!.
         erThrArgCysGlnProLeuAsnTrpMetLeuLeuProLeuValLeuValLeuLeuValT
 22331 : GCACCCGATGCCAGCCTCTCAACTGGATGCTCCTGCCGCTCGTCCTGGTCCTCCTGGTCA : 22390

    92 : alValSerGlyValLeuAlaGlnGlnGluThrLeuLeuLeuTyrLeuLeuThrCysLeuI :   111
         .!:!!||||||  !:!! !!||| ! |||!:!|||||||||||||||||||||  !:!!|
         hrMetSerGlyGlnValProGlnTyrGluSerLeuLeuLeuTyrLeuLeuThrIleIleI
 22391 : CCATGTCGGGGCAAGTACCGCAATATGAAAGTCTGCTCCTCTACTTGCTCACTATCATCA : 22450

   112 : leThrAlaAlaHisIleHisTyrGlyValSerVal  >>>> Target Intron 2 >> :   123
         |||||  !|||||||||||||||||||||!!!|||            110 bp       
         leThrLeuAlaHisIleHisTyrGlyValCysVal++                       
 22451 : TCACCCTGGCGCACATCCACTACGGAGTCTGCGTGgt....................... : 22488

   124 : >>  ValSerGlnLeuSerGlnHisPheHisIleArgThrPheSerLeuArgLysProSe :   141
             |||!:!|||||||||:!!||||||:!!|||||| !!||||||||||||||||||!:
           ++ValAsnGlnLeuSerLysHisPheAsnIleArgProPheSerLeuArgLysProAs
 22489 : ..agGTGAACCAACTGAGCAAGCATTTCAACATCCGGCCCTTCTCTTTACGGAAGCCCAA : 22650

   142 : rSerAspUnkLeuGlyValGluGluAlaMetAlaAlaGlyAlaGluGluLysValAlaLe :   161
         !||||||   |||!  :::||||||         |||...   ||||||||||||::!||
         nSerAsp***LeuAspMetGluGlu---------AlaAlaGluGluGluLysValSerLe
 22651 : CTCCGATTGACTAGAcatggaggag---------gcagcagaagaggagaaAGTCAGCCT : 22701

   162 : uArgSerAlaGluGluLeu :   167
         |!:!|||||||||! !|||
         uGlnSerAlaGluGlyLeu
 22702 : GCAGTCTGCAGAGGGGCTG : 22721

vulgar: SPP00000212_2.0 0 167 . KQ751719.1:subseq(544966,42721) 19999 22721 + 579 M 61 183 5 0 2 I 0 2116 3 0 2 M 61 183 5 0 2 I 0 106 3 0 2 M 27 81 G 3 0 M 15 45
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	gene	20000	22721	579	+	.	gene_id 1 ; sequence SPP00000212_2.0 ; gene_orientation +
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	cds	20000	20182	.	+	.	
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	exon	20000	20182	.	+	.	insertions 0 ; deletions 0
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	splice5	20183	20184	.	+	.	intron_id 1 ; splice_site "GT"
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	intron	20183	22302	.	+	.	intron_id 1
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	splice3	22301	22302	.	+	.	intron_id 0 ; splice_site "AG"
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	cds	22303	22485	.	+	.	
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	exon	22303	22485	.	+	.	insertions 0 ; deletions 0
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	splice5	22486	22487	.	+	.	intron_id 2 ; splice_site "GT"
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	intron	22486	22595	.	+	.	intron_id 2
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	splice3	22594	22595	.	+	.	intron_id 1 ; splice_site "AG"
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	cds	22596	22721	.	+	.	
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	exon	22596	22721	.	+	.	insertions 0 ; deletions 3
KQ751719.1:subseq(544966,42721)	exonerate:protein2genome:local	similarity	20000	22721	579	+	.	alignment_id 1 ; Query SPP00000212_2.0 ; Align 20000 1 183 ; Align 22303 62 183 ; Align 22596 123 81 ; Align 22677 153 45
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis