Command line: [exonerate -m p2g --showtargetgff -q SELENOH.anole.fa -t KQ748829.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SELENOH.Anole Target: KQ748829.1 Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold1169, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 0 -> 79 Target range: 269814 -> 271380 1 : SerLysSerUnkArgValPheGlyArgAsnAlaAsnAlaValSerGluAlaLeuGlnG : 20 ||||||||| ||||||!:!||||||||||||:!!||||||.!!:!!||||||!::| SerLysSer***ArgValTyrGlyArgAsnAlaAspAlaValGlyGlnAlaLeuArgG 269815 : AGTAAAAGCTGACGAGTCTACGGGCGCAACGCGGATGCTGTTGGCCAGGCCCTGCGCC : 269872 21 : lnAlaPheSerGluIleValValGluIleAsnProGluLysProArgArgAsnThrPh : 39 |||||||| !!!!::!:..!|||||||||||||||!!:|||||||||||||||!:!|| lnAlaPheProAspLeuThrValGluIleAsnProAspLysProArgArgAsnSerPh 269873 : AGGCCTTTCCTGACCTGACCGTGGAGATCAACCCTGACAAGCCCCGCAGAAACAGCTT : 269929 40 : eGluIleValLeuValLysGluAspGlyThr{S} >>>> Target Intron 1 > : 50 ||||:!:||||||:!!||| ||||||! !{!} 1332 bp eGluValValLeuLeuLys---AspGlyIle{A}++ 269930 : TGAGGTGGTCCTGTTGAAA---GATGGCATA{A}gt...................... : 269962 51 : >>> {er}LysGluLeuTrpSerGlyLeuLysLysGlyProProArgLysLeuLysP : 67 {!!} !|||||||||||||||||||||||||||||||||||||||||||||| ++{rg}ValGluLeuTrpSerGlyLeuLysLysGlyProProArgLysLeuLysP 269963 : ...ag{GG}GTGGAGTTATGGAGCGGCCTTAAGAAGGGGCCACCACGCAAGCTGAAAT : 271342 68 : heProGluProSerLysValValGluValLeuLysGly : 79 |||||||||||!:!|||||||||||| !||||||||| heProGluProAsnLysValValGluSerLeuLysGly 271343 : TCCCAGAACCAAACAAGGTGGTTGAAAGTCTGAAGGGC : 271380 vulgar: SELENOH.Anole 0 79 . KQ748829.1 269814 271380 + 286 M 45 135 G 1 0 M 3 9 S 0 1 5 0 2 I 0 1328 3 0 2 S 1 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-13 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ748829.1 exonerate:protein2genome:local gene 269815 271380 286 + . gene_id 1 ; sequence SELENOH.Anole ; gene_orientation + KQ748829.1 exonerate:protein2genome:local cds 269815 269959 . + . KQ748829.1 exonerate:protein2genome:local exon 269815 269959 . + . insertions 0 ; deletions 1 KQ748829.1 exonerate:protein2genome:local splice5 269960 269961 . + . intron_id 1 ; splice_site "GT" KQ748829.1 exonerate:protein2genome:local intron 269960 271291 . + . intron_id 1 KQ748829.1 exonerate:protein2genome:local splice3 271290 271291 . + . intron_id 0 ; splice_site "AG" KQ748829.1 exonerate:protein2genome:local cds 271292 271380 . + . KQ748829.1 exonerate:protein2genome:local exon 271292 271380 . + . insertions 0 ; deletions 0 KQ748829.1 exonerate:protein2genome:local similarity 269815 271380 286 + . alignment_id 1 ; Query SELENOH.Anole ; Align 269815 1 135 ; Align 269950 47 9 ; Align 271294 51 87 # --- END OF GFF DUMP --- # -- completed exonerate analysis