Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SBP299.anole.fa -t SBP299.extraccio.KQ748789.1.fa] Hostname: [ws101066u] C4 Alignment: ------------ Query: SBP2.anole.fa Target: KQ748789.1:subseq(1145897,45420) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold71, whole genome shotgun sequence Model: protein2genome:local Raw score: 2283 Query range: 0 -> 853 Target range: 9999 -> 37267 1 : SerGlnGlyIleLysLeuSerAlaGluValLysProPheValProLysTyrAlaAlaVal : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||.!!|||||| SerGlnGlyIleLysLeuSerAlaGluValLysProPheValProLysTyrThrAlaVal 10000 : TCTCAGGGCATCAAGTTATCAGCAGAGGTCAAACCGTTTGTCCCAAAATACACGGCGGTA : 10057 21 : ThrValAlaTrpSerGluProSerGluAlaCysValPheProArgTyrTyrThrThrCys : 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrValAlaTrpSerGluProSerGluAlaCysValPheProArgTyrTyrThrThrCys 10058 : ACAGTGGCATGGTCAGAACCCTCAGAAGCATGTGTCTTTCCTAGATATTATACAACATGC : 10117 41 : TyrProTyrValGlnAspProSerValAspLysTyrValProPheTyrIleSerPheLeu : 60 |||||||||||||||!!:||| !!||||||||||||||||||! !! ! !|||||| TyrProTyrValGlnGluProProValAspLysTyrValProSerSerSerHisPheLeu 10118 : TACCCATATGTTCAGGAGCCACCAGTGGATAAGTATGTACCTTCTTCGTCACATTTCTTG : 10177 61 : {G} >>>> Target Intron 1 >>>> {ly}GlyLeuSerProTyrThrProAsp : 69 {|} 1238 bp {||}! !:!!|||||| !:!! ! ! {G}+- ++{ly}GluIleSerProLeuSerPheCys 10178 : {G}gg.........................ag{GG}GAAATCTCACCCCTCTCCTTTTGT : 11442 70 : AlaAlaProAsnValTyrThrValProAsnPheArgSerGluAsnAsnAsnSerLys{Le : 89 ..!:!!! ! !||| ! !!|||! !! !|||!:!|||:!! !!..!!.! ! {! CysSerLeuProValLeuProValHisIlePheLysSerGlnCysThrLysLeuPro{Gl 11443 : TGTTCCCTCCCCGTCCTCCCAGTTCATATTTTTAAATCCCAGTGTACAAAATTGCCC{CA : 11502 90 : } >>>> Target Intron 2 >>>> {u}PheSerSerSerArgGlnGlyArgAsp : 98 } 1036 bp {!}! !|||||||||!:!|||! !|||:!! }-+ ++{n}CysSerSerSerGlnGlnAspArgAsn 11503 : }tt.........................ag{A}TGCAGCTCTTCTCAACAAGACAGAAAC : 12565 99 : TyrAlaLysGlnThrProValSerArgLysGluAlaAlaTyrHisProArg >>>> Ta : 116 |||!.!!:!|||||| !! !! !||||||||||||!.! !! !|||||| TyrValArgGlnThrSerHisIleArgLysGluAlaGlyAsnIleProArg++ 12566 : TATGTCAGACAGACTTCTCACATCAGAAAAGAGGCTGGAAACATTCCCAGGgt....... : 12621 117 : rget Intron 3 >>>> ArgArgProArgAspPheGluProLysLeuGluSerLysA : 129 3587 bp |||||||||!:! !! ||||||||||||!!:!!!|||| ++ArgArgProLysHisGluGluProLysLeuAspCysLysA 12622 : ..................agAGGCGACCAAAACATGAGGAACCCAAACTAGACTGTAAAA : 16245 130 : rgProAspGlySerAspSerProAsnArgSerThrGluSerSerSerTyrThrAlaLeuH : 149 |||||!!:! !||||||||| !! !! !!!!|||! !|||! !! ! !|||||||||| rgProGluAspSerAspSerSerCysThrThrThrGlySerLeuPheProThrAlaLeuH 16246 : GGCCTGAAGACAGTGACTCTTCTTGCACAACAACAGGGAGTTTGTTTCCTACTGCTCTGC : 16305 150 : isGlyArgAsnProIleLysSer{A} >>>> Target Intron 4 >>>> {sp}A : 158 |||||!:!!:!! !:!!||||||{|} 234 bp {||}| isGlyLysSerHisValLysSer{A}++ ++{sp}A 16306 : ATGGCAAAAGTCATGTTAAATCA{G}gt.........................ag{ac}a : 16566 159 : rgLeuIleLysAlaLeuSerGlyLysPheLysGlnPheProAsnAsnGluCysLeuProG : 178 ||! ! !||||||:!!!:!.!!|||!:!|||!!..!!||||||!..:!!! ||||||| rgHisAspLysAlaValAsnSerLysTyrLysHisIleProAsnThrLysSerLeuProG 16567 : gGCATGATAAAGCTGTGAACAGTAAATATAAGCACATTCCAAATACAAAGTCGCTTCCAG : 16626 179 : luProAlaPheGluValAsnLeuSerAspPheProLysLeuGlnSerThrArgSerCysA : 198 |||||! !||||||:!!!.!||||||||||||||||||||||||||| ! !!||| !: luProAspPheGluIleThrLeuSerAspPheProLysLeuGlnSerLeuGlySerAsnA 16627 : AACCTGACTTTGAAATTACCCTATCAGATTTCCCCAAATTGCAAAGCCTGGGAAGTAATG : 16686 199 : snLeuLeuAsnPheGlnLysGlnThrTrpGlyProLeuGlySerAlaGluGlyAspLysM : 218 !!||||||.!..!!|||||| |||||| !!||||||||||||||||||||||||! !: spLeuLeuGluLeuGlnLysCysThrTrpTrpProLeuGlySerAlaGluGlyAspThrL 16687 : ATCTGCTTGAGCTTCAAAAATGTACCTGGTGGCCATTGGGCTCAGCTGAAGGAGATACAC : 16746 219 : etProArgLysProProGluLys<->AlaValSerAlaLeuValThrLysGlu >>>> : 235 !!||| !||| !! !!! !||| !:!!||||||! !:!!||||||||| euProLeuLysSerThrGlyLysProLysIleSerAlaSerIleThrLysGlu++ 16747 : TGCCTTTGAAATCCACAGGAAAACCAAAGATTTCTGCTTCTATAACCAAAGAGgt..... : 16802 236 : Target Intron 5 >>>> ValCysIleSerLysThrTyrAsnVal >>>> Targ : 244 1642 bp !||||||! ! ! ! ! ++LysCysIlePheAlaTrpValLeuLys++ 16803 : ....................agAAATGTATTTTTGCTTGGGTCCTGAAAgt......... : 18471 245 : et Intron 6 >>>> SerPheTrpGlnGlyLeuLeuGlySerSerSerGluSerGlu : 257 1516 bp !.! !:: !.!! !:!! !|||!!!!!!...!!! ! ++LysProPhePheAlaTrpMet***SerCysTrpSerCys*** 18472 : ................agAAGCCATTTTTTGCATGGATGTAAAGTTGTTGGAGTTGTTGA : 20024 258 : LysValLeuProSerGlyPheHisGlyGlnValValSerGlnValHisLeuAspTyrPhe : 277 !:!!||| !! !! !||| ! !..! !!.! !!|||||| !! !:!!! !! ! AlaIleLeuAsnMetValPheCysGlnMetSerAlaProGlnValSerSerAsnSerCys 20025 : GCAATTCTGAATATGGTGTTCTGTCAAATGTCAGCTCCTCAGGTGTCTTCAAATTCCTGT : 20084 278 : ThrGluThrProLysSerCysAlaThrValLeuSerGlnThrProLysArgThrValSer : 297 .!!:!!|||! ! !|||!! ||||||||||||||||||||||||||||||! !!.! !! AlaLysThrGlnValSerTrpAlaThrValLeuSerGlnThrProLysArgIleAlaPro 20085 : GCCAAGACCCAGGTGTCTTGGGCCACTGTGCTTTCACAAACTCCAAAGAGAATTGCCCCT : 20144 298 : ThrProAlaAlaSerProSerThrAsnHisTyrGluAsnLysGlyLysGlnGlyValLeu : 317 :!!|||:!!:!! !! !:!!! !!:!|||! !! !:!:!!|||||| ||||||! ! SerProSerSerValLeuAlaArgSerHisSerGlySerGluGlyLysValGlyValPro 20145 : TCACCTTCCTCTGTTCTTGCCAGAAGCCATTCTGGCAGTGAAGGAAAAGTTGGTGTTCCT : 20204 318 : GluAsp{G} >>>> Target Intron 7 >>>> {ln}ProLysGlyAsnAlaSer : 326 ||||||{ } 980 bp {!!} !!!:!! !||||||||| GluAsp{*}++ -+{**}ThrArgGluAsnAlaSer 20205 : GAAGAT{T}gt.........................gg{AA}ACAAGAGAGAATGCCAGT : 21211 327 : AspSerGluProGluGluIleValGluLysLysLysLysLysLysArgAsnLysLysLys : 346 ||||||||| !!|||!!:::: |||||||||||||||||||||::: ||||||||| AspSerGluAlaGluAspMetSerGluLysLysLysLysLysLysLys---LysLysLys 21212 : GACAGTGAAGCTGAAGACatgtcagaaaagaagaaaaaaaagaagaag---aagaagaaa : 21268 347 : AlaLysAlaSerSerGluThrGluAsnValProAsnLysSerIleIleTyrGlnGluPro : 366 ||||||:!!!:!|||.!...!|||!!.:!!! !|||:!!!:!|||:!! !|||!!:||| AlaLysSerAsnSerAsnValGluLysLeuHisAsnGluAsnIleLeuValGlnAspPro 21269 : gccaaATCAAACAGTAATGTGGAGAAGCTTCATAATGAAAACATTTTAGTTCAAGATCCT : 21328 367 : ProArgIleGlu >>>> Target Intron 8 >>>> AspAspGluGluPheProA : 377 |||||||||||| 1255 bp ||||||||||||||||||| ProArgIleGlu++ ++AspAspGluGluPheProA 21329 : CCACGAATTGAGgt.........................agGATGATGAAGAATTTCCTG : 22616 378 : spLeuSerMetAlaAlaAspLysLysTyrLysProGlyThrProLysTyrTyrCysSerP : 397 |||||:!! |||.!!||||||!!.||||||! !||||||||||||!:!! !|||||| spLeuAlaAlaAlaThrAspLysAsnTyrLysLeuGlyThrProLysPheCysCysSerV 22617 : ACTTAGCTGCTGCTACTGATAAAAACTACAAGCTAGGGACTCCGAAGTTCTGCTGTTCAG : 22676 398 : roAlaIleThrGlyLysGlnThrGln >>>> Target Intron 9 >>>> ValAr : 407 ! !! !||| !! ! |||.!!:!! 1694 bp ||||| alProAlaThrArgAspGlnAlaGlu++ ++ValAr 22677 : TGCCTGCTACCAGGGATCAGGCTGAAgt.........................agGTCAG : 24400 408 : gIleValArgAlaAspValThrSer{G} >>>> Target Intron 10 >>>> {l : 416 |:!! !!:!|||!!: ! !!:!{!} 422 bp { gValProLysAlaGluAsnGluAsn{G}+- ++{l 24401 : GGTTCCGAAGGCAGAAAATGAGAAT{G}ga..........................ag{A : 24850 417 : y}ArgLysThrGlyLysGlnValLeuSerGlyProValGluLysArgLysThrGln >> : 435 !} ! !! !|||!:!||| !! !|||.!. ...|||||||||||||||||| u}ValLeuIleGlyArgGlnProSerSerSerIleThrGluLysArgLysThrGln++ 24851 : A}GTACTAATTGGAAGACAGCCTTCATCCAGtataacagaaaaaaggaaaacgCAGgt.. : 24908 436 : >> Target Intron 11 >>>> GluThrSerLysSerGlyGlyLysLysSerHisL : 446 109 bp ! !:!!|||||||||.!! !!|||||||||!!.: ++GlySerSerLysSerSerArgLysLysSerGlnI 24909 : ........................agGGGTCGTCTAAGAGCAGTCGGAAGAAAAGCCAGA : 25048 447 : euProValGlnLeuAspLeuGlyAsnMetLeuAlaAlaLeuGluGlnLysGlnGlnAlaG : 466 !!|||||||||||||||||||||...|||||||||||||||||||||||||||!!.|||| leProValGlnLeuAspLeuGlyGlyMetLeuAlaAlaLeuGluGlnLysGlnHisAlaG 25049 : TTCCTGTGCAGCTGGATTTGGGAGGGatgctggctgctttggaacaaaAACAGCATGCAG : 25108 467 : luLysThrLysHisSerProLysProValValLeuSer{V} >>>> Target Intro : 479 |||||:!!|||!!.||||||||||||||||||||||||{|} 4731 bp luLysSerLysGlnSerProLysProValValLeuSer{V}++ 25109 : AGAAATCAAAACAGTCACCAAAGCCTGTGGTGCTTTCA{G}gt................. : 25150 480 : n 12 >>>> {al}GlyGlyThrValThrLeuProSerLysGluProMetAsnGlnThr : 494 {||}|||.!!.!!|||||||||||||||!:!||| !!! ! !! ! ++{al}GlySerAlaValThrLeuProSerArgGluSerThrProValIle 25151 : .........ag{TT}GGTAGTGCAGTAACATTGCCTTCAAGGGAATCTACACCTGTAATA : 29923 495 : LysAsnGlnGlnLeuAsnGlnGlyAsnSerProHisAsnProLeuAspSerSerSerPro : 514 |||!:!!!.! !|||||||||!.!!!. !|||||||||||||||||||||!!!|||||| LysSerHisLeuLeuAsnGlnAlaLysValProHisAsnProLeuAspSerThrSerPro 29924 : AAAAGTCATCTGTTAAACCAAGCAAAGGTTCCACATAACCCATTGGACTCCACGTCTCCT : 29983 515 : LeuIleLysLysGlyLysGlnArgGluValProLysAlaLysLysProThrSerLeuLys : 534 ! !:!!|||||||||||||||||||||||||||||||||||||||||||||||||||||| SerValLysLysGlyLysGlnArgGluValProLysAlaLysLysProThrSerLeuLys 29984 : TCGGTCAAGAAGGGAAAGCAGCGAGAAGTCCCCAAGGCAAAAAAGCCAACATCACTGAAA : 30043 535 : Lys >>>> Target Intron 13 >>>> IleIleLeuArgGluArgGluGlnArg : 544 ||| 888 bp |||||||||:::||||||||||||||| Lys++ ++IleIleLeuLysGluArgGluGlnArg 30044 : AAGgt..........................agattattttgaaagagagagagcagcgG : 30961 545 : LysGlnGlnHisLeuLeuGluGlnMetAlaThrProLysAspSerAspAlaAlaGlnAsp : 564 |||!!.||||||||||||||||||! ! !! !! !||||||..!!!:|||! !|||.!. LysHisGlnHisLeuLeuGluGlnThrGluIleLeuLysAspGluGluAlaAspGlnGln 30962 : AAACACCAACATCTTTTAGAACAGACAGAGATTCTGAAGGATGAAGAAGCTGATCAGCAG : 31021 565 : <->AlaGluSerThrAlaGluAsnGlnGlyTyrSerGluAspAsnLysAla{A} >>>> : 581 .!!||||||||| !!|||:!!||| ! !|||:!!|||!.!||||||{|} CysThrGluSerThrProGluAspGlnLeuValSerGlnAspThrLysAla{A}++ 31022 : TGTACGGAATCTACTCCTGAGGATCAGTTAGTTTCTCAAGACACCAAAGCA{G}gt.... : 31078 582 : Target Intron 14 >>>> {sp}ProAspIleLeuAlaGlnAspGlyProGluVa : 592 1075 bp {||}|||! |||:!!.!!|||..!..! !||||| -+{sp}ProAlaIleValThrGlnSerAsnLeuGluVa 31079 : ......................gg{AT}CCTGCAATTGTGACTCAAAGTAATTTAGAAGT : 32183 593 : lAspLeuLysCysThrGluLeuAsnGlySerTyrThrGluSerValLeuAspProValGl : 612 | !:!! ! |||..!:!!:!!!:!|||||| :!!|||!:! !|||! !|||..!|| lProValHisCysValGlnIleSerGlySer---SerGluAsnSerLeuValProThrGl 32184 : ACCTGTGCACTGTGTACAAATCAGTGGCTCC---TCGGAAAACTCCCTCGTTCCTACACA : 32240 613 : nLeuLysSerAsnLeuProLysIleHisSerArgArgPheArg{As} >>>> Target : 627 ||||!!.|||!.!||||||||||||||||||||||||||||||{||} 8 nLeuAsnSerThrLeuProLysIleHisSerArgArgPheArg{As}++ 32241 : GCTAAATTCCACTCTTCCCAAGATCCACAGCAGAAGATTTAGA{GA}gt........... : 32289 628 : Intron 15 >>>> {p}TyrCysThrGlnValLeuSerLysGluValAspSerCysV : 641 31 bp {|}|||||||||||||||||||||||||||||||||||||||| ++{p}TyrCysThrGlnValLeuSerLysGluValAspSerCysV 32290 : ...............ag{T}TATTGTACCCAGGTCCTTAGTAAAGAGGTTGACAGCTGCG : 33158 642 : alThrAspLeuLeuLysGluLeuValArgPheGlnAspArgLeuTyrGlnLysAspProV : 661 |||||||||||||||||||||||||||||||||||||||||! !|||||||||||||||| alThrAspLeuLeuLysGluLeuValArgPheGlnAspArgGlnTyrGlnLysAspProV 33159 : TAACTGATCTTTTGAAAGAGCTGGTTCGCTTCCAAGACCGCCAGTATCAGAAAGACCCAG : 33218 662 : alLysAlaLysThrLysArgArgLeuValMetGlyLeuArgGluValLeuLysHisLeuL : 681 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| alLysAlaLysThrLysArgArgLeuValMetGlyLeuArgGluValLeuLysHisLeuL 33219 : TCAAGGCCAAGACGAAACGCAGGCTCGttatggggctgagagaagtgtTGAAACACCTGA : 33278 682 : ysLeuLysLysLeuLysCysValIleIleSerProAsnCysGluLysIleGlnSerLys{ : 701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||{ ysLeuLysLysLeuLysCysValIleIleSerProAsnCysGluLysIleGlnSerLys{ 33279 : AGTTGAAAAAATTGAAATgtgtcatcatttctccaaactgTGAAAAAATTCAGTCAAAA{ : 33338 702 : G} >>>> Target Intron 16 >>>> {ly}GlyLeuAspGluThrLeuHisLeu : 709 |} 436 bp {||}|||||||||||||||||||||||| G}++ ++{ly}GlyLeuAspGluThrLeuHisLeu 33339 : G}gt..........................ag{GT}GGGTTGGATGAGACTCTGCATCTC : 33798 710 : IleIleAspSerAlaCysGluGlnAsnIleProPheValPheAlaLeuAsnArgLysAla : 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| IleIleAspSerAlaCysGluGlnAsnIleProPheValPheAlaLeuAsnArgLysAla 33799 : ATCATTGACTCTGCTTGTGAACAGAACATCCCATTTGTCTTTGCTCTCAATCGTAAAGCT : 33858 730 : LeuGlyArgCysLeuAsnLysAlaValProValSerValValGlyIlePheSerTyrAsp : 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuGlyArgCysLeuAsnLysAlaValProValSerValValGlyIlePheSerTyrAsp 33859 : CTAGGGCGCTGTTTGAACAAAGCAGTGCCTGTCAGTGTGGTGGGAATATTCAGTTACGAT : 33918 750 : GlyAlaGln >>>> Target Intron 17 >>>> AspTyrPheHisLysMetVal : 759 ||||||||| 1350 bp |||! !||||||||||||||| GlyAlaGln++ ++AspCysPheHisLysMetVal 33919 : GGCGCTCAGgt..........................agGACTGTTTTCACAAAATGGTG : 35298 760 : GluLeuThrMetGluAlaArgGlnAlaTyrLysAspMetIleSerAlaLeuGluArgGlu : 779 ||||||||||||||||||||| !|||||||||!!:||||||:!!.!!|||:!!!:!||| GluLeuThrMetGluAlaArgLeuAlaTyrLysGluMetIleAlaThrLeuGlnGlnGlu 35299 : GAACTGACAATGGAAGCAAGGTTGGCATATAAAGAAATGATTGCAACTCTACAACAAGAG : 35358 780 : SerAlaGluGluGluSerGlySerAspCysThrProSerLysAsnProTyrSerGluSer : 799 !!!|||! ||||||!.!! !|||||||||||| !||||||! ! !!:!!!!|||||| CysAlaGlyGluGluLysGluSerAspCysThrAsnSerLysIleAsnPheArgGluSer 35359 : TGTGCTGGTGAAGAAAAAGAAAGTGACTGTACCAACTCTAAAATCAATTTCAGAGAGAGC : 35418 800 : ArgProLeuAspThrValGluValProProProGluSerGluGluAspValProAspTyr : 819 !.!! !! !|||.!!! !:!!!.!||| !!|||||||||!!:|||!!:||||||:!!||| AsnLeuGlnAspAlaGlyLysAlaProSerProGluSerAspGluGluValProAsnTyr 35419 : AACCTACAAGATGCTGGTAAAGCACCTTCTCCAGAGTCAGATGAGGAAGTCCCAAATTAc : 35478 820 : {I} >>>> Target Intron 18 >>>> {le}LysIleTrpLysGlnLysLeuGl : 828 {|} 1685 bp {||}||||||||||||::!|||||||| {I}++ ++{le}LysIleTrpLysArgLysLeuGl 35479 : {a}gt..........................ag{TT}AAAATCTGGAAGAGAAAGCTTGA : 37190 829 : uGluGluTyrLysProTyrMetLeuGluLeuGluLysGlnLeuThrAlaGluMetLeuPr : 848 ||||||||||!!.||||||:!!||||||||||||!!.!:! !.!!||||||! ||| ! uGluGluTyrAsnProTyrValLeuGluLeuGluAsnArgAlaAlaAlaGluThrLeuTh 37191 : GGAGGAGTATAATCCTTATGTGCTGGAACTGGAAAATCGAGCAGCTGCTGAAACACTGAC : 37250 849 : oMetGlyPheGluGlu : 853 !:!!|||||||||||| rLeuGlyPheGluGlu 37251 : CTTGGGTTTTGAAGAG : 37267 vulgar: SBP2.anole.fa 0 853 . KQ748789.1:subseq(1145897,45420) 9999 37267 + 2283 M 60 180 S 0 1 5 0 2 I 0 1234 3 0 2 S 1 2 M 27 81 S 0 2 5 0 2 I 0 1032 3 0 2 S 1 1 M 26 78 5 0 2 I 0 3583 3 0 2 M 41 123 S 0 1 5 0 2 I 0 230 3 0 2 S 1 2 M 68 204 G 0 3 M 9 27 5 0 2 I 0 1638 3 0 2 M 9 27 5 0 2 I 0 1512 3 0 2 M 76 228 S 0 1 5 0 2 I 0 976 3 0 2 S 1 2 M 22 66 G 1 0 M 27 81 5 0 2 I 0 1251 3 0 2 M 35 105 5 0 2 I 0 1690 3 0 2 M 10 30 S 0 1 5 0 2 I 0 418 3 0 2 S 1 2 M 18 54 5 0 2 I 0 105 3 0 2 M 44 132 S 0 1 5 0 2 I 0 4727 3 0 2 S 1 2 M 56 168 5 0 2 I 0 884 3 0 2 M 29 87 G 0 3 M 16 48 S 0 1 5 0 2 I 0 1071 3 0 2 S 1 2 M 21 63 G 1 0 M 23 69 S 0 2 5 0 2 I 0 827 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 432 3 0 2 S 1 2 M 51 153 5 0 2 I 0 1346 3 0 2 M 67 201 S 0 1 5 0 2 I 0 1681 3 0 2 S 1 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-09 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local gene 10000 37267 2283 + . gene_id 1 ; sequence SBP2.anole.fa ; gene_orientation + KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 10000 10180 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 10000 10180 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 10181 10182 . + . intron_id 1 ; splice_site "GG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 10181 11418 . + . intron_id 1 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 11417 11418 . + . intron_id 0 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 11419 11503 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 11419 11503 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 11504 11505 . + . intron_id 2 ; splice_site "TT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 11504 12539 . + . intron_id 2 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 12538 12539 . + . intron_id 1 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 12540 12618 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 12540 12618 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 12619 12620 . + . intron_id 3 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 12619 16205 . + . intron_id 3 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 16204 16205 . + . intron_id 2 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 16206 16329 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 16206 16329 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 16330 16331 . + . intron_id 4 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 16330 16563 . + . intron_id 4 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 16562 16563 . + . intron_id 3 ; splice_site "ag" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 16564 16799 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 16564 16799 . + . insertions 3 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 16800 16801 . + . intron_id 5 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 16800 18441 . + . intron_id 5 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 18440 18441 . + . intron_id 4 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 18442 18468 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 18442 18468 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 18469 18470 . + . intron_id 6 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 18469 19984 . + . intron_id 6 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 19983 19984 . + . intron_id 5 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 19985 20213 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 19985 20213 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 20214 20215 . + . intron_id 7 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 20214 21193 . + . intron_id 7 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 21192 21193 . + . intron_id 6 ; splice_site "GG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 21194 21342 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 21194 21342 . + . insertions 0 ; deletions 1 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 21343 21344 . + . intron_id 8 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 21343 22597 . + . intron_id 8 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 22596 22597 . + . intron_id 7 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 22598 22702 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 22598 22702 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 22703 22704 . + . intron_id 9 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 22703 24396 . + . intron_id 9 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 24395 24396 . + . intron_id 8 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 24397 24427 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 24397 24427 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 24428 24429 . + . intron_id 10 ; splice_site "GA" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 24428 24849 . + . intron_id 10 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 24848 24849 . + . intron_id 9 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 24850 24905 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 24850 24905 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 24906 24907 . + . intron_id 11 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 24906 25014 . + . intron_id 11 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 25013 25014 . + . intron_id 10 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 25015 25147 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 25015 25147 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 25148 25149 . + . intron_id 12 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 25148 29878 . + . intron_id 12 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 29877 29878 . + . intron_id 11 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 29879 30048 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 29879 30048 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 30049 30050 . + . intron_id 13 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 30049 30936 . + . intron_id 13 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 30935 30936 . + . intron_id 12 ; splice_site "ag" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 30937 31075 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 30937 31075 . + . insertions 3 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 31076 31077 . + . intron_id 14 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 31076 32150 . + . intron_id 14 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 32149 32150 . + . intron_id 13 ; splice_site "GG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 32151 32286 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 32151 32286 . + . insertions 0 ; deletions 1 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 32287 32288 . + . intron_id 15 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 32287 33117 . + . intron_id 15 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 33116 33117 . + . intron_id 14 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 33118 33338 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 33118 33338 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 33339 33340 . + . intron_id 16 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 33339 33774 . + . intron_id 16 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 33773 33774 . + . intron_id 15 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 33775 33929 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 33775 33929 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 33930 33931 . + . intron_id 17 ; splice_site "GT" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 33930 35279 . + . intron_id 17 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 35278 35279 . + . intron_id 16 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 35280 35481 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 35280 35481 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice5 35482 35483 . + . intron_id 18 ; splice_site "gt" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local intron 35482 37166 . + . intron_id 18 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local splice3 37165 37166 . + . intron_id 17 ; splice_site "AG" KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local cds 37167 37267 . + . KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local exon 37167 37267 . + . insertions 0 ; deletions 0 KQ748789.1:subseq(1145897,45420) exonerate:protein2genome:local similarity 10000 37267 2283 + . alignment_id 1 ; Query SBP2.anole.fa ; Align 10000 1 180 ; Align 11421 62 81 ; Align 12541 90 78 ; Align 16206 116 123 ; Align 16566 158 204 ; Align 16773 226 27 ; Align 18442 235 27 ; Align 19985 244 228 ; Align 21196 321 66 ; Align 21262 344 81 ; Align 22598 371 105 ; Align 24397 406 30 ; Align 24852 417 54 ; Align 25015 435 132 ; Align 29881 480 168 ; Align 30937 536 87 ; Align 31027 565 48 ; Align 32153 582 63 ; Align 32216 604 69 ; Align 33119 628 219 ; Align 33777 702 153 ; Align 35280 753 201 ; Align 37169 821 99 # --- END OF GFF DUMP --- # -- completed exonerate analysis