Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SBP298.anole.fa -t SBP298.extraccio.KQ757972.1.fa] Hostname: [ws101067u] C4 Alignment: ------------ Query: SPP00000203_2.0 # Protein # SECIS binding protein 2 (SBP2) # Anole lizard Target: KQ757972.1:subseq(311421,42781) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold772, whole genome shotgun sequence Model: protein2genome:local Raw score: 4307 Query range: 0 -> 1020 Target range: 999 -> 41781 1 : LysAsnValLysLeuSerAlaGluValGluProPheIleProGlnLysLysGlyProAsp : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||!.!|||||| LysAsnValLysLeuSerAlaGluValGluProPheIleProGlnLysLysAlaProAsp 1000 : aaGAATGTGAAACTGTCTGCTGAGGTAGAACCATTCATTCCTCAGAAGAAGGCTCCTGAT : 1057 21 : SerLeuMetMetProMetAlaLeuProAsnGluAsnGlyGlyValAsnGlyValGluAla : 40 ||||||||||||||||||!.!|||||||||!!:..!|||.!!|||..!||||||||| !! SerLeuMetMetProMetValLeuProAsnAspGlyGlySerValGlyGlyValGluPro 1058 : TCACTCATGATGCCAATGGTGCTGCCTAACGATGGCGGAAGTGTTGGTGGTGTGGAACCA : 1117 41 : AlaProIleProSerTyrLeuIleThrCysTyrProPheValGlnGluAsnGlnSerAsn : 60 .!!||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrProIleProSerTyrLeuIleThrCysTyrProPheValGlnGluAsnGlnSerAsn 1118 : ACTCCTATTCCCAGCTATCTGATTACTTGCTACCCGTTTGTTCAGGAAAACCAGTCCAAT : 1177 61 : {Ar} >>>> Target Intron 1 >>>> {g}GlnLeuProLeuTyrAsnAsnAsp : 69 {||} 1435 bp {|}|||||||||||||||||||||||| {Ar}++ ++{g}GlnLeuProLeuTyrAsnAsnAsp 1178 : {AG}gt.........................ag{A}CAACTTCCGCTGTATAATAATGAC : 2639 70 : IleArgTrpGlnGlnProAsnProAsnProAlaGlyProTyrLeuAlaTyrProIleLeu : 89 |||||||||||||||||||||! !||||||.!!||||||||||||||||||||||||:!! IleArgTrpGlnGlnProAsnGlnAsnProThrGlyProTyrLeuAlaTyrProIleIle 2640 : ATCAGGTGGCAGCAGCCTAACCAGAACCCCACCGGGCCGTACCTTGCGTATCCCATTATA : 2699 90 : SerAlaGlnProProValSerThrGluTyrThrTyrTyrGlnLeuMetProAlaProCys : 109 |||||||||||||||||||||.!!|||||||||||||||||||||||||||||||||||| SerAlaGlnProProValSerAlaGluTyrThrTyrTyrGlnLeuMetProAlaProCys 2700 : TCAGCTCAGCCGCCTGTGTCAGCCGAGTACACCTATTACCAATTGATGCCGGCGCCATGC : 2759 110 : AlaGlnValMetGlyPheTyrHisProPheProAlaProTyrSerAlaProPheGlnThr : 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.!! AlaGlnValMetGlyPheTyrHisProPheProAlaProTyrSerAlaProPheGlnAla 2760 : GCTCAAGTCATGGGCTTCTATCACCCATTCCCGGCGCCTTACTCCGCGCCCTTCCAGGCA : 2819 130 : AlaSerAlaMetAsnThrValThrThrGluCysThrAspArgProThrGlnProAsnGln : 149 |||||||||:!!!:!||||||.!!.!!||||||||||||||||||.!!||||||!:!||| AlaSerAlaValSerThrValAlaAlaGluCysThrAspArgProAlaGlnProSerGln 2820 : GCAAGCGCTGTGAGTACAGTTGCAGCAGAATGCACAGATCGTCCAGCCCAGCCAAGTCAG : 2879 150 : ValPheProMetCysSerGlnArgSerArgThrAsnLeuPheGlyLeuLeuIlePheLeu : 169 |||||||||:!!|||!!!||||||||||||!:! ! ! |||! ! !||| ! ValPheProLeuCysArgGlnArgSerArgSerAlaThrArgGlyProAlaIleGlnLys 2880 : GTCTTTCCGTTGTGTAGGCAGAGGAGCAGAAGTGCCACCAGGGGACCAGCCATACAAAAA : 2939 170 : >>>> Target Intron 2 >>>> LysGlnGlnGlnProLeuGlnThrHisIleL : 180 1263 bp !!.||||||||||||||||||:!!||||||| ++ +-AsnGlnGlnGlnProLeuGlnSerHisIleL 2940 : gt.........................aaAACCAGCAGCAGCCTTTGCAGTCGCACATAA : 4235 181 : ysSerLysArgProProValLysSerValAlaThrGlnLysGluThrCysAlaSerGlyP : 200 ||!:!|||||||||||||||||||||||||||||||||||||||||| !!|||||||||| ysAsnLysArgProProValLysSerValAlaThrGlnLysGluThrSerAlaSerGlyP 4236 : AAAACAAAAGGCCTCCAGTGAAAAGTGTTGCTACTCAGAAAGAGACCAGTGCATCGGGCC : 4295 201 : roGluThrArgProLysIleValLeuLeuValAspAlaCysGlnGlnThr{A} >>>> : 217 |||||!:!||||||||||||||||||||||||||||||||||||||||||{|} roGluSerArgProLysIleValLeuLeuValAspAlaCysGlnGlnThr{A}++ 4296 : CTGAGAGCAGACCGAAAATCGTGTTGCTTGTGGATGCTTGTCAACAAACG{G}gt..... : 4349 218 : Target Intron 3 >>>> {sp}PheProSerGluIleAlaSerLysSerLeuSerG : 229 3765 bp {||}||||||||||||||||||!:!||||||||||||| ++{sp}PheProSerGluIleAlaAsnLysSerLeuSerG 4350 : ....................ag{AC}TTCCCCTCAGAGATAGCCAATAAGTCACTCTCGG : 8147 230 : luSerMetSerThrMetHisTrpLysProLysThrArgArgArgArgSerSerHisProA : 249 ||||||||!!!! !|||||||||||||||||| !||||||||||||!!!|||||||||| luSerMetThrMetMetHisTrpLysProLysGlyArgArgArgArgThrSerHisProA 8148 : AGAGCATGACCATGATGCACTGGAAACCAAAAGGCAGGCGACGGCGGACCTCCCACCCAG : 8207 250 : laGluSerSerSerGluGlnGlyAlaSerGluAlaAspIleAspSerAspSerGlyTyrC : 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| laGluSerSerSerGluGlnGlyAlaSerGluAlaAspIleAspSerAspSerGlyTyrC 8208 : CGGAATCCTCTAGTGAGCAAGGAGCTAGTGAGGCAGACATCGATAGCGATAGTGGGTACT : 8267 270 : ysSerProLysHisSerAsnGlnAlaAlaAlaValThrSerArgSerValGluSerAlaA : 289 ||||||||||||||||||||||||||||||||:!!!:!! !||||||..!!!:!!!!.!| ysSerProLysHisSerAsnGlnAlaAlaAlaMetSerLeuArgSerThrAspCysValA 8268 : GTAGTCCTAAGCACAGCAACCAGGCTGCGGCCATGAGTTTGAGAAGCACCGACTGTGTTG : 8327 290 : laGlyAsnVal{A} >>>> Target Intron 4 >>>> {la}GlyAlaThrTrpA : 298 || !||||||{!} 1802 bp {.!}|||!.!||||||: laProAsnVal{G}++ ++{ly}GlyValThrTrpS 8328 : CACCAAATGTA{G}gt.........................ag{GT}GGTGTCACTTGGT : 10156 299 : laAsnValSerSerGlnAlaThrGlnLysLysProTrpMetGluArgThrProAlaPheS : 318 !!!:!|||||||||||||||||||||||||||||||||:::||||||.!!|||:!!|||! erSerValSerSerGlnAlaThrGlnLysLysProTrpIleGluArgAlaProSerPheT 10157 : CCAGTGTCAGCTCCCAGGCTACtcagaaaaagccctggatagagAGAGCACCATCTTTCA : 10216 319 : erArgGlyGlyArgGlnAlaGluGlnHisAsnSerSerGln >>>> Target Intro : 332 !!||||||||||||||| !!|||!!.!.!!:!!:!|||||| 1174 bp hrArgGlyGlyArgGlnProGluHisArgSerAsnSerGln++ 10217 : CAAGAGGGGGAAGGCAGCCTGAGCATCGTAGTAATTCACAGgt................. : 10260 333 : n 5 >>>> ProAlaPheArgCysArgGlyHisSerThrSerSerGluArgArgGlnAs : 348 |||||||||||||||||||||||||||||||||||||||||||||||||| ++ProAlaPheArgCysArgGlyHisSerThrSerSerGluArgArgGlnAs 10261 : ........agCCTGCCTTTCGATGCAGGGGGCATAGCACATCTTCAGAAAGAAGACAGAA : 11480 349 : nLeuGlnLysLysProGluLysProValSerSerSerGlnSerSerLysArgGluGlnSe : 368 ||||||| |||||||||:!!.!!|||||||||::::::::::::||||| nLeuGln------------LysProValAlaGlySerGlnSerAsnArgLysAspGlnSe 11481 : CTTGCAG------------AAACCCGTAGCAGGAagccagtcaaacagaaaagacCAGAG : 11528 369 : rProGlySerLeuTyrPheGlu >>>> Target Intron 6 >>>> AspGluGlu : 378 ||||! ! !!|||||||||:!! 2149 bp ||||||||| rProGluProLeuTyrPheGln++ ++AspGluGlu 11529 : TCCTGAGCCTTTATATTTTCAGgt.........................agGATGAAGAA : 13707 379 : GluPheProGluLeuAsnSerAspSerGlyAsnSerLysGlyGlyAsnMetGlnLeuLys : 398 ||||||||||||||||||.!!||||||||||||||||||.!!!.!!.!||||||! !||| GluPheProGluLeuAsnGlyAspSerGlyAsnSerLysSerAlaThrMetGlnGlnLys 13708 : GAATTTCCAGAATTAAATGGCGACAGTGGAAATTCTAAAAGTGCAACTATGCAGCAGAAA : 13767 399 : AsnAlaProLysVal >>>> Target Intron 7 >>>> LeuAspAspLeuProG : 409 :!!|||||||||||| 11146 bp |||||||||||||||| HisAlaProLysVal++ ++LeuAspAspLeuProG 13768 : CATGCACCAAAAGTGgt.........................agTTGGATGACTTGCCTG : 24946 410 : luAsnSerProIleAsnIleValGlnThrProIleProIleThrThrSerValProLysA : 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| luAsnSerProIleAsnIleValGlnThrProIleProIleThrThrSerValProLysA 24947 : AGAATTCCCCAATCAACATCGTACAGACTCCAATTCCAATCACTACCTCCGTTCCAAAGC : 25006 430 : rgAlaLysSerGlnLysLysLysAlaLeuAlaAlaAlaLeuAlaThrAlaGlnGluTyrS : 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| rgAlaLysSerGlnLysLysLysAlaLeuAlaAlaAlaLeuAlaThrAlaGlnGluTyrS 25007 : GGGCAAAAAGTCAAAAGAAGAAagctctggctgcagcattggCCACAGCTCAGGAGTATT : 25066 450 : erGluIleSerMetGluGlnArgLysLeuGln >>>> Target Intron 8 >>>> : 460 |||||||||||||||||||||||||||||||| 1590 bp erGluIleSerMetGluGlnArgLysLeuGln++ + 25067 : CAGAAATCAGCATGGAGCAGAGGAAACTGCAGgt.........................a : 26687 461 : GluAlaValSerLysAlaAlaGlyLysLysSerLysThrProValGlnLeuAspLeuGl : 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| +GluAlaValSerLysAlaAlaGlyLysLysSerLysThrProValGlnLeuAspLeuGl 26688 : gGAAGCAGTTTCTAAAGCGGCTGGGAAAAAGAGTAAAACGCCTGTACAGTTAGACTTGGG : 26746 480 : yAspMetLeuAlaAlaLeuGluLysGlnGlnGlnAlaMetLysAlaArgGlnIleThrAs : 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yAspMetLeuAlaAlaLeuGluLysGlnGlnGlnAlaMetLysAlaArgGlnIleThrAs 26747 : TGACATGCTGGCGGCCCTTGAGAAACAGCAGCAAGCCATGAAGGCTCGCCAGATCACCAA : 26806 500 : nThrArgProLeuSerTyrThr{V} >>>> Target Intron 9 >>>> {al}Gl : 508 ||||||||||||||||||||||{|} 3051 bp {||}|| nThrArgProLeuSerTyrThr{V}++ ++{al}Gl 26807 : TACCAGGCCCCTCTCATACACA{G}gt.........................ag{TT}GG : 29884 509 : yAsnAlaAlaProPheHisThrLysGluSerThrAsnArgLysSerLeuAlaLysGlyGl : 528 |!:! !!||||||||||||.!!|||||| !!.!!|||||||||||||||!.!|||||||| ySerProAlaProPheHisAlaLysGluProAlaAsnArgLysSerLeuGlyLysGlyGl 29885 : CAGCCCGGCTCCTTTTCATGCCAAAGAACCTGCTAATCGAAAATCTTTAGGTAAAGGTCA : 29944 529 : nProSerValGlyCysLeuAsnProLeuAspSerThrSerProLysValLysArgGlyLy : 548 ||||||||||.!!||||||||||||||||||||||||:!!||||||:!!||||||||||| nProSerValSerCysLeuAsnProLeuAspSerThrAlaProLysIleLysArgGlyLy 29945 : GCCTTCAGTAAGTTGTCTCAATCCATTGGATTCCACTGCCCCCAAAATAAAacgagggaa : 30004 549 : sGluArgGluLeuSerLysLeuLysArgProThrAlaLeuLysLys >>>> Target : 564 |||||||||||||||||||||||||||||||||||||||||||||| 22 sGluArgGluLeuSerLysLeuLysArgProThrAlaLeuLysLys++ 30005 : ggagagagagctttCAAAGTTGAAGCGTCCCACAGCACTTAAAAAGgt............ : 30054 565 : Intron 10 >>>> IleIleLeuLysGluArgGluGluLysLysGlyArgLeuSerVa : 578 59 bp |||||||||||||||||||||||||||||||||||||||||||| ++IleIleLeuLysGluArgGluGluLysLysGlyArgLeuSerVa 30055 : ..............agATTAtcttgaaagagagagaagagaagaaaggacGCTTGTCTGT : 32353 579 : lAspHisThrIleValGlyAlaAspGluGluGlnGluValAspLeuAsnLeuThrProAs : 598 ||||!!.!.!:!!:!!|||||||||||||||||||||||| !:!!:!!|||||| !!|| lAspGlnAsnLeuLeuGlyAlaAspGluGluGlnGluValProValAspLeuThrAlaAs 32354 : TGACCAGAACCTTCTGGGTGCTGATGAAGAACAAGAGGTACCTGTGGACCTGACTGCCAA : 32413 599 : nGlnSerGluGluLeuAlaSerGlnGlu{G} >>>> Target Intron 11 >>>> : 608 |! !||||||!!:|||||||||||||||{|} 2711 bp nProSerGluAspLeuAlaSerGlnGlu{G}++ + 32414 : CCCGTCCGAAGATCTAGCATCTCAAGAA{G}gt..........................a : 35153 609 : {lu}ProGlyLeuSerValProSerAspThrSerLeuSerProAlaSerGlnAsnSerP : 627 {||} !!|||||||||:!!|||||||||.!!|||||||||||||||||||||||||||| +{lu}ThrGlyLeuSerMetProSerAspAlaSerLeuSerProAlaSerGlnAsnSerP 35154 : g{AA}ACTGGCTTGAGTATGCCCAGTGACGCCTCGCTCTCCCCAGCAAGCCAGAACTCTC : 35211 628 : roTyrCysMetThrProValSerGlnGlySerProAlaSerSerGlyIleGlySerProM : 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| roTyrCysMetThrProValSerGlnGlySerProAlaSerSerGlyIleGlySerProM 35212 : CCTATTGCATGACTCCAGTTTCCCAAGGATCTCCTGCCAGTTCAGGGATAGGGAGTCCAA : 35271 648 : etAlaSerSerThrIleThrLysIleHisSerLysArgPheArg{Gl} >>>> Targe : 662 ||||||||||||||||||||||||||||||||||||||||||||{||} etAlaSerSerThrIleThrLysIleHisSerLysArgPheArg{Gl}++ 35272 : TGGCATCTTCAACCATAACCAAAATTCACAGCAAGAGATTCAGA{GA}gt.......... : 35320 663 : t Intron 12 >>>> {u}TyrCysAsnGlnValLeuSerLysGluIleAspGluCys : 675 1137 bp {|}||||||||||||||||||||||||||||||||||||||| ++{u}TyrCysAsnGlnValLeuSerLysGluIleAspGluCys 35321 : ................ag{G}TACTGTAATCAAGTCCTAAGTAAAGAAATAGATGAGTGT : 36492 676 : ValThrLeuLeuLeuGlnGluLeuValSerPheGlnGluGlnIleTyrGlnLysAspPro : 695 |||||||||||||||||||||||||||||||||||||||!!.|||||||||||||||||| ValThrLeuLeuLeuGlnGluLeuValSerPheGlnGluHisIleTyrGlnLysAspPro 36493 : GTGACTCTCCTGTTGCAAGAGCTTGTCAGCTTCCAAGAACACATTTACCAAAAAGACCCC : 36552 696 : MetArgAlaLysAlaLysArgArgLeuValMetGlyLeuArgGluValThrLysHisMet : 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetArgAlaLysAlaLysArgArgLeuValMetGlyLeuArgGluValThrLysHisMet 36553 : ATGAGAGCAAAGGCAAAGAGGAGGCTTGTGATGGGTCTGCGAGAGGTGACTAAACATATG : 36612 716 : LysLeuSerLysIleLysCysValIleIleSerProAsnCysGluLysIleGlnSerLys : 735 ||||||!:!||||||||||||||||||||||||||||||||||||||||||||||||||| LysLeuAsnLysIleLysCysValIleIleSerProAsnCysGluLysIleGlnSerLys 36613 : AAGCTCAACAAGATCAAGTGTGTCATCATTTCTCCCAACTGTGAAAAAATCCAATCAAAA : 36672 736 : {G} >>>> Target Intron 13 >>>> {ly}GlyLeuAspGluAlaLeuTyrAs : 744 {|} 961 bp {||}||||||||||||||||||||||| {G}++ ++{ly}GlyLeuAspGluAlaLeuTyrAs 36673 : {G}gt..........................ag{GT}GGACTGGATGAAGCCCTGTATAA : 37660 745 : nValIleAlaMetAlaArgGluGlnGluIleProPheValPheAlaLeuGlyArgLysAl : 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| nValIleAlaMetAlaArgGluGlnGluIleProPheValPheAlaLeuGlyArgLysAl 37661 : TGTAATAGCTATGGCTCGGGAGCAGGAAATCCCTTTTGTCTTTGCTCTTGGGCGTAAAGC : 37720 765 : aLeuGlyArgCysValAsnLysLeuValProValSerValValGlyIlePheAsnTyrSe : 784 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||!! aLeuGlyArgCysValAsnLysLeuValProValSerValValGlyIlePheAsnTyrTh 37721 : TCTCGGCCGCTGTGTGAACAAGCTAGTTCCAGTGAGTGTGGTGGGAATCTTCAATTACAC : 37780 785 : rGlyAlaGlu >>>> Target Intron 14 >>>> AsnLeuPheAsnLysLeuVa : 794 !||||||||| 2794 bp |||||||||||||||||||| rGlyAlaGlu++ ++AsnLeuPheAsnLysLeuVa 37781 : TGGTGCTGAGgt..........................agaacctcttcaacaaattAGT : 40604 795 : lSerLeuThrGluGluAlaArgLysAlaTyrArgAspMetValAlaAlaMetGluGlnGl : 814 ||||||||||||||||||||||:!!||||||||||||||||||||||||||||||||||| lSerLeuThrGluGluAlaArgGlnAlaTyrArgAspMetValAlaAlaMetGluGlnGl 40605 : GTCACTAACGGAAGAGGCCAGGCAGGCCTACCGAGACATGGTTGCAGCCATGGAGCAAGA : 40664 815 : uGlnGluGluAlaLeuLysAsnValLysLysValProHisHisMetGlyHisSerArgAs : 834 ||||||||||||||||||||||:!!||||||||||||||||||||||||||||||||||| uGlnGluGluAlaLeuLysAsnIleLysLysValProHisHisMetGlyHisSerArgAs 40665 : GCAGGAGGAGGCCTTGAAGAACATTAAGAAAGTGCCCCACCACATGGGCCATTCTCGGAA : 40724 835 : nProSerAlaAlaSerAlaIleSerPheCysSerValIleSerGluProIleSerGluVa : 854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| nProSerAlaAlaSerAlaIleSerPheCysSerValIleSerGluProIleSerGluVa 40725 : CCCTTCCGCAGCAAGCGCCATTTCGTTCTGCAGTGTTATTTCTGAGCCCATCTCAGAAGT : 40784 855 : lAsnGluLysGluTyr{G} >>>> Target Intron 15 >>>> {lu}ThrAsnT : 863 ||||||||||||||||{|} 464 bp {||}||||||| lAsnGluLysGluTyr{G}++ ++{lu}ThrAsnT 40785 : GAATGAAAAGGAGTAT{G}gt..........................ag{AA}ACCAATT : 41275 864 : rpArgSerMetValGluThrSerAspGlyLeuGluAlaSerGluAsnGluArgGluAlaS : 883 |||||!:!|||||||||||||||||||||||||||.!!|||||||||||||||||||||! rpArgAsnMetValGluThrSerAspGlyLeuGluThrSerGluAsnGluArgGluAlaC 41276 : GGAGGAACATGGTGGAAACATCTGATGGCTTAGAAACCTCTGAGAATGAAAGAGAGGCCT : 41335 884 : erPheLysSerAlaValProGluLysProGlyAsnSerAsnLysValIleValAsnLysG : 903 !!! !||| !.!!!.!|||||||||||||||||| |||:::...... !| ysCysLysValThrAlaProGluLysProGlyAsnProAlaValValValAlaGluAlaG 41336 : GTTGTAAGGTCACTGCTCCAgaaaaacctggcaaccctgcggtggtggtggcagaggcAG : 41395 904 : lu >>>> Target Intron 16 >>>> LeuSerLeuAlaAlaValGlyValValT : 913 || 36 bp ||||||||||||.!!||||||:!!!.!: lu+- ++LeuSerLeuAlaThrValGlyIleAlaS 41396 : AGgc..........................agCTCTCTCTAGCCACAGTCGGGATTGCCT : 41461 914 : hrValSerAlaGlnValLysAlaProSerGlyLysGluGluValLysProAspAspAsnL : 933 !!|||! ! !!!.! !|||!.! ...||||||||||||||||||||||||||| | erValMetIleHisGlyLysGlyLeuGlyGlyLysGluGluValLysProAspAsp---L 41462 : CAGTCATGATTCATGGGAAAGGActgggtgggaaagaggaggtGAAGCCAGACGAT---C : 41518 934 : euGluTrpAlaSerGlnGlnSerThrAspThrGlySerLeuAspGlySerCysArgAspI : 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euGluTrpAlaSerGlnGlnSerThrAspThrGlySerLeuAspGlySerCysArgAspI 41519 : TGGAATGGGCCTCTCAGCAGAGCACAGACACGGGGTCCTTGGACGGCAGTTGCAGGGATA : 41578 954 : leLeuAsnSerSerMetThrSerThrThrSerThrLeuValProGlyMetLeuGluGluG : 973 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| leLeuAsnSerSerMetThrSerThrThrSerThrLeuValProGlyMetLeuGluGluG 41579 : TTTTGAACTCCTCTATGACCAGTACAACCAGTACTCTTGTCCCAGGAATgcttgaggaag : 41638 974 : luAspAspGluGluAspGluAspGluAspAspTyrThrHisGluProIleSerGluGluV : 993 ||:::|||||||||:::||||||||||||||||||.!!|||||||||||||||||||||| luGluAspGluGluGluGluAspGluAspAspTyrAlaHisGluProIleSerGluGluV 41639 : aagaggatgaggaagaggaggacgaaGATGACTATGCTCATGAACCTATATCTGAGGAAG : 41698 994 : alGlnLeuAsnSerArgIleGluSerTrpValSerGluThrGlnArgThrMetGluThrL : 1013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| alGlnLeuAsnSerArgIleGluSerTrpValSerGluThrGlnArgThrMetGluThrL 41699 : TCCAGCTCAACAGCAGAATTGAATCTTGGGTCTCTGAGACCCAACGGACTATGGAAACAC : 41758 1014 : euGlnLeuGlyLysSerLeuSer : 1020 ||||||||||||||||||||||| euGlnLeuGlyLysSerLeuSer 41759 : TCCAGCTTGGGAAGAGCCTCAGT : 41781 vulgar: SPP00000203_2.0 0 1020 . KQ757972.1:subseq(311421,42781) 999 41781 + 4307 M 60 180 S 0 2 5 0 2 I 0 1431 3 0 2 S 1 1 M 108 324 5 0 2 I 0 1259 3 0 2 M 47 141 S 0 1 5 0 2 I 0 3761 3 0 2 S 1 2 M 75 225 S 0 1 5 0 2 I 0 1798 3 0 2 S 1 2 M 38 114 5 0 2 I 0 1170 3 0 2 M 19 57 G 4 0 M 21 63 5 0 2 I 0 2145 3 0 2 M 28 84 5 0 2 I 0 11142 3 0 2 M 56 168 5 0 2 I 0 1586 3 0 2 M 47 141 S 0 1 5 0 2 I 0 3047 3 0 2 S 1 2 M 56 168 5 0 2 I 0 2255 3 0 2 M 44 132 S 0 1 5 0 2 I 0 2707 3 0 2 S 1 2 M 53 159 S 0 2 5 0 2 I 0 1133 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 957 3 0 2 S 1 2 M 51 153 5 0 2 I 0 2790 3 0 2 M 72 216 S 0 1 5 0 2 I 0 460 3 0 2 S 1 2 M 43 129 5 0 2 I 0 32 3 0 2 M 28 84 G 1 0 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local gene 1000 41781 4307 + . gene_id 1 ; sequence SPP00000203_2.0 ; gene_orientation + KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 1000 1181 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 1000 1181 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 1182 1183 . + . intron_id 1 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 1182 2616 . + . intron_id 1 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 2615 2616 . + . intron_id 0 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 2617 2941 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 2617 2941 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 2942 2943 . + . intron_id 2 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 2942 4204 . + . intron_id 2 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 4203 4204 . + . intron_id 1 ; splice_site "AA" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 4205 4346 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 4205 4346 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 4347 4348 . + . intron_id 3 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 4347 8111 . + . intron_id 3 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 8110 8111 . + . intron_id 2 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 8112 8339 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 8112 8339 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 8340 8341 . + . intron_id 4 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 8340 10141 . + . intron_id 4 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 10140 10141 . + . intron_id 3 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 10142 10257 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 10142 10257 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 10258 10259 . + . intron_id 5 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 10258 11431 . + . intron_id 5 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 11430 11431 . + . intron_id 4 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 11432 11551 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 11432 11551 . + . insertions 0 ; deletions 4 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 11552 11553 . + . intron_id 6 ; splice_site "Gt" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 11552 13700 . + . intron_id 6 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 13699 13700 . + . intron_id 5 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 13701 13784 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 13701 13784 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 13785 13786 . + . intron_id 7 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 13785 24930 . + . intron_id 7 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 24929 24930 . + . intron_id 6 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 24931 25098 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 24931 25098 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 25099 25100 . + . intron_id 8 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 25099 26688 . + . intron_id 8 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 26687 26688 . + . intron_id 7 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 26689 26830 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 26689 26830 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 26831 26832 . + . intron_id 9 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 26831 29881 . + . intron_id 9 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 29880 29881 . + . intron_id 8 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 29882 30051 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 29882 30051 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 30052 30053 . + . intron_id 10 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 30052 32310 . + . intron_id 10 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 32309 32310 . + . intron_id 9 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 32311 32443 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 32311 32443 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 32444 32445 . + . intron_id 11 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 32444 35154 . + . intron_id 11 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 35153 35154 . + . intron_id 10 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 35155 35317 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 35155 35317 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 35318 35319 . + . intron_id 12 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 35318 36454 . + . intron_id 12 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 36453 36454 . + . intron_id 11 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 36455 36675 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 36455 36675 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 36676 36677 . + . intron_id 13 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 36676 37636 . + . intron_id 13 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 37635 37636 . + . intron_id 12 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 37637 37791 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 37637 37791 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 37792 37793 . + . intron_id 14 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 37792 40585 . + . intron_id 14 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 40584 40585 . + . intron_id 13 ; splice_site "ag" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 40586 40802 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 40586 40802 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 40803 40804 . + . intron_id 15 ; splice_site "GT" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 40803 41266 . + . intron_id 15 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 41265 41266 . + . intron_id 14 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 41267 41397 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 41267 41397 . + . insertions 0 ; deletions 0 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice5 41398 41399 . + . intron_id 16 ; splice_site "GC" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local intron 41398 41433 . + . intron_id 16 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local splice3 41432 41433 . + . intron_id 15 ; splice_site "AG" KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local cds 41434 41781 . + . KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local exon 41434 41781 . + . insertions 0 ; deletions 1 KQ757972.1:subseq(311421,42781) exonerate:protein2genome:local similarity 1000 41781 4307 + . alignment_id 1 ; Query SPP00000203_2.0 ; Align 1000 1 180 ; Align 2618 62 324 ; Align 4205 170 141 ; Align 8114 218 225 ; Align 10144 294 114 ; Align 11432 332 57 ; Align 11489 355 63 ; Align 13701 376 84 ; Align 24931 404 168 ; Align 26689 460 141 ; Align 29884 508 168 ; Align 32311 564 132 ; Align 35157 609 159 ; Align 36456 663 219 ; Align 37639 737 153 ; Align 40586 788 216 ; Align 41269 861 129 ; Align 41434 904 84 ; Align 41518 933 264 # --- END OF GFF DUMP --- # -- completed exonerate analysis