Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q MSRB3.anole.fa -t MSRB3.extraccio.KQ752608.1.fa] Hostname: [ws101092U] C4 Alignment: ------------ Query: SPP00000221_2.0 # Protein # Methionine-R-sufoxide reductase 3 (MSRB3) # Anole lizard Target: KQ752608.1:subseq(58765,88509) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold1075, whole genome shotgun sequence Model: protein2genome:local Raw score: 834 Query range: 0 -> 184 Target range: 1999 -> 86509 1 : MetSerAlaPheAsnLeuLeuHisLeuValThrLysSerGlnProValAlaLeuArgAla : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetSerAlaPheAsnLeuLeuHisLeuValThrLysSerGlnProValAlaLeuArgAla 2000 : ATGTCTGCATTCAACTTACTGCATTTGGTGACCAAGAGCCAGCCAGTGGCCCTGCGAGCC : 2057 21 : CysGlyLeuProSer{G} >>>> Target Intron 1 >>>> {ly}SerArgArg : 29 |||||||||||||||{|} 11141 bp {||}||||||||| CysGlyLeuProSer{G}++ ++{ly}SerArgArg 2058 : TGTGGGCTTCCCTCA{G}gt.........................ag{GG}TCACGTAGG : 13225 30 : AspLysLysPheCysLysValAlaPheProGlnGluGluLeuArgLysArgLeuThrPro : 49 ||||||||| !|||||||||!.!||| !!|||:!!!!:|||!:!||||||||||||||| AspLysLysThrCysLysValValPheSerGlnGlnAspLeuLysLysArgLeuThrPro 13226 : GATAAAAAGACCTGTAAGGTGGTCTTCTCCCAACAGGATTTGAAGAAGCGGCTGACACCC : 13285 50 : LeuGlnTyrHisValThrGlnGluLysGlyThrGlu{Se} >>>> Target Intron : 62 ||||||||||||||||||||||||||||||||||||{||} 1702 bp LeuGlnTyrHisValThrGlnGluLysGlyThrGlu{Se}++ 13286 : TTGCAGTACCATGTTACTCAGGAAAAAGGGACTGAA{AG}gt.................. : 13328 63 : 2 >>>> {r}AlaPheGluGlyGluTyrThrTyrHisLysAspSerGlyIleTyrLys : 78 {|}||||||||||||||||||||||||||||||! ! !|||:!!|||||| ++{r}AlaPheGluGlyGluTyrThrTyrHisLysAlaHisGlyValTyrLys 13329 : .......ag{T}GCCTTTGAGGGAGAATACACATATCACAAAGCTCATGGAGTATACAAA : 15074 79 : CysValValCysGlyThrProLeuPhe{Ly} >>>> Target Intron 3 >>>> : 88 |||||||||||||||||||||||||||{||} 21391 bp CysValValCysGlyThrProLeuPhe{Ly}++ ++ 15075 : TGTGTGGTTTGCGGAACTCCTTTGTTC{AA}gt.........................ag : 36495 89 : {s}SerGluThrLysPheAspSerAsnSer{G} >>>> Target Intron 4 >>>> : 98 {|}|||||||||||||||||||||:::|||{|} 35058 bp {s}SerGluThrLysPheAspSerSerSer{G}++ 36496 : {A}TCAGagacaaagtttgactccagttcA{G}gt......................... : 36528 99 : {ly}TrpProSerPheTyrAspValIleAlaSerAspLysIleThrPheThrAspAsp : 116 {||}|||||||||||||||||||||||||||||||||! !|||||||||||||||||| ++{ly}TrpProSerPheTyrAspValIleAlaSerAspThrIleThrPheThrAspAsp 36529 : ag{GC}TGGCCTTCATTCTACGATGTGATTGCTTCTGACACAATTACATTCACTGATGAC : 71637 117 : TyrSerPheGlyMetHisArgValGluThrSerCysSerGln >>>> Target Intr : 131 ||||||||||||||||||||| !!|||||||||||||||||| 14663 b TyrSerPheGlyMetHisArgPheGluThrSerCysSerGln++ 71638 : TACTCCTTTGGGATGCACAGATTTGAGACAAGCTGCAGTCAGgt................ : 71684 132 : on 5 >>>> CysGlyAlaHisLeuGlyHisIlePheAspAspGlyProArgProThrG : 147 p |||||||||||||||||||||:!!||||||||||||||||||||||||| ++CysGlyAlaHisLeuGlyHisValPheAspAspGlyProArgProThrG 71685 : .........agTGTGGTGCTCATCTTGGTCATGTATTTGATGACGGGCCTCGTCCAACTG : 86393 148 : lyLysArgTyrCysIleAsnSerAlaSerLeuSerPheGluProThr<->AspLysAsnL : 166 ||||||||||||||||||||||||||||||||||||||||| !:!! |||! !|||! lyLysArgTyrCysIleAsnSerAlaSerLeuSerPheGluLysSerAlaAspThrAsnG 86394 : GTAAACGATATTGCATAAACTCAGCTTCATTGTCCTTTGAAAAGTCTGCAGACACGAACC : 86453 167 : euAlaAlaGluGlySerIleSerSerThrSerAlaGlnProAspLysThrGluLeu : 184 ! !!!.!|||||||||||||||||||||! !!.!||| !!||||||||||||||| lnProGlyGluGlySerIleSerSerThrPheValGlnAlaAspLysThrGluLeu 86454 : AGCCCGGAGAGGGAAGCATTAGCTCTACTTTTGTCCAAGCAGATAAGACTGAGCTG : 86509 vulgar: SPP00000221_2.0 0 184 . KQ752608.1:subseq(58765,88509) 1999 86509 + 834 M 25 75 S 0 1 5 0 2 I 0 11137 3 0 2 S 1 2 M 35 105 S 0 2 5 0 2 I 0 1698 3 0 2 S 1 1 M 25 75 S 0 2 5 0 2 I 0 21387 3 0 2 S 1 1 M 9 27 S 0 1 5 0 2 I 0 35054 3 0 2 S 1 2 M 32 96 5 0 2 I 0 14659 3 0 2 M 32 96 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-10 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local gene 2000 86509 834 + . gene_id 1 ; sequence SPP00000221_2.0 ; gene_orientation + KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local cds 2000 2075 . + . KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local exon 2000 2075 . + . insertions 0 ; deletions 0 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice5 2076 2077 . + . intron_id 1 ; splice_site "GT" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local intron 2076 13216 . + . intron_id 1 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice3 13215 13216 . + . intron_id 0 ; splice_site "AG" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local cds 13217 13325 . + . KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local exon 13217 13325 . + . insertions 0 ; deletions 0 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice5 13326 13327 . + . intron_id 2 ; splice_site "GT" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local intron 13326 15027 . + . intron_id 2 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice3 15026 15027 . + . intron_id 1 ; splice_site "AG" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local cds 15028 15105 . + . KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local exon 15028 15105 . + . insertions 0 ; deletions 0 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice5 15106 15107 . + . intron_id 3 ; splice_site "GT" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local intron 15106 36496 . + . intron_id 3 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice3 36495 36496 . + . intron_id 2 ; splice_site "ag" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local cds 36497 36525 . + . KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local exon 36497 36525 . + . insertions 0 ; deletions 0 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice5 36526 36527 . + . intron_id 4 ; splice_site "GT" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local intron 36526 71583 . + . intron_id 4 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice3 71582 71583 . + . intron_id 3 ; splice_site "AG" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local cds 71584 71681 . + . KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local exon 71584 71681 . + . insertions 0 ; deletions 0 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice5 71682 71683 . + . intron_id 5 ; splice_site "GT" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local intron 71682 86344 . + . intron_id 5 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local splice3 86343 86344 . + . intron_id 4 ; splice_site "AG" KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local cds 86345 86509 . + . KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local exon 86345 86509 . + . insertions 3 ; deletions 0 KQ752608.1:subseq(58765,88509) exonerate:protein2genome:local similarity 2000 86509 834 + . alignment_id 1 ; Query SPP00000221_2.0 ; Align 2000 1 75 ; Align 13219 27 105 ; Align 15029 63 75 ; Align 36498 89 27 ; Align 71586 99 96 ; Align 86345 131 96 ; Align 86444 163 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis