Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q MSRB2.anole.fa -t MSRB2.extraccio.KQ747608.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: MSRB2.anole Target: KQ747608.1:subseq(28445,49419) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold1483, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 618 Query range: 0 -> 140 Target range: 29419 -> 19999 1 : SerLeuThrArgTyrAspGluSerArgSerAsnAlaAspTrpGlnLysLysLeuThrPro : 20 ||||||||||||||||||||||||!.! !!.!.!!|||||||||||||||||||||||| SerLeuThrArgTyrAspGluSerHisValThrThrAspTrpGlnLysLysLeuThrPro 29419 : TCTCTGACAAGATATGACGAGTCACACGTTACCACTGACTGGCAAAAGAAACTgactcct : 29362 21 : GluGlnPheTyrValThrArgGluLysGlyThrGluLeu >>>> Target Intron : 34 |||||||||:::||||||||||||||||||||||||||| 3670 bp GluGlnPheHisValThrArgGluLysGlyThrGluLeu++ 29361 : gaacaattccatgtCACAAGGGAAAAAGGAACTGAATTGgt................... : 29318 35 : 1 >>>> ProPheSerGlyIleHisLeuThrAsnAlaGluProGlyMetTyrHisCysV : 51 ||||||||||||!!::!!|||:!!|||.!!|||||||||||||||||||||| ++ProPheSerGlyMetTyrLeuSerAsnThrGluProGlyMetTyrHisCysV 29317 : ......agCCTTTTAGTGGGATGTATCTGTCTAACACGGAGCCTGGGATGTACCACTGCG : 25599 52 : alCysCysSerAlaProLeuPhe{Ar} >>>> Target Intron 2 >>>> {g}S : 60 ||||||||..!||||||||||||{!!} 3556 bp {!}| alCysCysAspAlaProLeuPhe{Se}++ ++{r}S 25598 : TCTGTTGCGATGCTCCACTGTTC{AG}gt.........................ag{C}T : 22016 61 : erGluAlaLysTyrAspSerGlyThrGlyTrpProSerPheSerGluAlaTyrGlyThrH : 80 ||||| !||||||||||||||||||||||||||||||||||||||||||:!!|||||| erGluLysLysTyrAspSerGlyThrGlyTrpProSerPheSerGluAlaHisGlyThrC 22015 : CAGAGAAGAAGTATGATTCTGGCACCGGATGGCCTTCCTTTTCAGAAGCACATGGGACGT : 21956 81 : isGlyThrAspGluSerAsnThrAsnIleLeuArgArgProAspAsnSerSerGlyLeuS : 100 !|||||||||||||||||||||::!|||||||||||||||||||||||| !|||! !! ysGlyThrAspGluSerAsnThrSerIleLeuArgArgProAspAsnSerLeuGlySerT 21955 : GTGGGACCGATGAAAGCAACACTTCTATCCTGAGGCGGCCTGATAACTCACTAGGATCAA : 21896 101 : erArgThrGluValIleCysLysGln >>>> Target Intron 3 >>>> CysAs : 110 !! !!|||||||||:!!||||||||| 1774 bp ||||| hrGlyThrGluValLeuCysLysGln++ ++CysAs 21895 : CTGGCACAGAAGTCCTTTGCAAACAGgt.........................agTGCGA : 20092 111 : pAlaHisLeuGlyHisValPheGlyAspGlyProLysProSerGlyGlnArgPheCysIl : 130 ||||||||||||||||||||||.!!|||||||||:!!||||||||||||||||||||||| pAlaHisLeuGlyHisValPheSerAspGlyProGluProSerGlyGlnArgPheCysIl 20091 : TGCCCACCTGGGCCACGTGTTCAGTGACGGTCCTGAGCCATCTGGGCAGAGGTTCTGCAT : 20032 131 : eAsnSerValSerLeuThrPheLysProSer : 140 ||||||||||||||||||||||||||||||| eAsnSerValSerLeuThrPheLysProSer 20031 : CAACAGCGTTTCATTAACATTTAAGCCAAGC : 20000 vulgar: MSRB2.anole 0 140 . KQ747608.1:subseq(28445,49419) 29419 19999 - 618 M 33 99 5 0 2 I 0 3666 3 0 2 M 25 75 S 0 2 5 0 2 I 0 3552 3 0 2 S 1 1 M 49 147 5 0 2 I 0 1770 3 0 2 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-09 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local gene 20000 29419 618 - . gene_id 1 ; sequence MSRB2.anole ; gene_orientation + KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local cds 29321 29419 . - . KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local exon 29321 29419 . - . insertions 0 ; deletions 0 KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local splice5 29319 29320 . - . intron_id 1 ; splice_site "GT" KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local intron 25651 29320 . - . intron_id 1 KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local splice3 25651 25652 . - . intron_id 0 ; splice_site "AG" KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local cds 25574 25650 . - . KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local exon 25574 25650 . - . insertions 0 ; deletions 0 KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local splice5 25572 25573 . - . intron_id 2 ; splice_site "GT" KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local intron 22018 25573 . - . intron_id 2 KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local splice3 22018 22019 . - . intron_id 1 ; splice_site "AG" KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local cds 21870 22017 . - . KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local exon 21870 22017 . - . insertions 0 ; deletions 0 KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local splice5 21868 21869 . - . intron_id 3 ; splice_site "GT" KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local intron 20096 21869 . - . intron_id 3 KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local splice3 20096 20097 . - . intron_id 2 ; splice_site "AG" KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local cds 20000 20095 . - . KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local exon 20000 20095 . - . insertions 0 ; deletions 0 KQ747608.1:subseq(28445,49419) exonerate:protein2genome:local similarity 20000 29419 618 - . alignment_id 1 ; Query MSRB2.anole ; Align 29420 1 99 ; Align 25651 34 75 ; Align 22017 60 147 ; Align 20096 109 96 # --- END OF GFF DUMP --- # -- completed exonerate analysis