Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q MSRB1.anole.fa -t MSRB1.extraccio.KQ751406.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000219_2.0 # Protein # Methionine-R-sufoxide reductase 1 (MSRB1) # Anole lizard 
        Target: KQ751406.1:subseq(83443,40431) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold3333, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 424
   Query range: 1 -> 94
  Target range: 2042 -> 24732

     2 : ProAla{G}  >>>> Target Intron 1 >>>>  {ly}MetTyrValCysSerLys :    10
         ||||||{|}           17954 bp          {||}!!:|||||||||:!!!:!
         ProAla{G}++                         ++{ly}IleTyrValCysAlaArg
  2043 : cccgcc{g}gt.........................ag{GG}ATCTACGTTTGCGCCAGA : 20021

    11 : CysGlyPheGluLeuPheSerSerLysSerLysTyrAlaHisSerSerProTrpProAla :    30
         ||||||!:!||||||||||||||||||!!!||||||||||||||||||||||||||||||
         CysGlyTyrGluLeuPheSerSerLysThrLysTyrAlaHisSerSerProTrpProAla
 20022 : TGCGGCTACGAACTCTTTTCCAGCAAAACAAAATACGCCCATTCGTCCCCATGGCCGGCG : 20081

    31 : PheThrGluThrIleHisAspAspSerIleThrLysTyrLeuGluArgProAsnAlaPhe :    50
         ||||||||||||||||||  !||||||:!!:!!||||||  !|||||||||..!|||!!.
         PheThrGluThrIleHisIleAspSerValSerLysTyrGluGluArgProGlyAlaLeu
 20082 : TTCACCGAAACCATCCACATCGACAGCGTCTCCAAATACGAAGAGCGCCCAGGTGCCTTG : 20141

    51 : Lys  >>>> Target Intron 2 >>>>  ValLeuCysGlyLysCysGlyAsnGlyL :    61
         |||            165 bp           ||||||||||||||||||||||||.!!|
         Lys++                         ++ValLeuCysGlyLysCysGlyAsnSerL
 20142 : AAGgt.........................agGTGCTCTGCGGGAAGTGTGGCAACAGTC : 20339

    62 : euGlyHisGluPheIleAsnAspGlyProLysLysGlyGlnSerArgPheUnkIlePheS :    81
         ||||||||||||||:!!|||||||||||||||||||||||||||||||||   |||||||
         euGlyHisGluPheLeuAsnAspGlyProLysLysGlyGlnSerArgPhe***IlePheS
 20340 : TGGGCCATGAATTTCTCAACGACGGCCCAAAGAAGGGTCAGTCTCGCTTCTGAATATTCA : 20399

    82 : erSerSerLeuLysPheValProLys{G}  >>>> Target Intron 3 >>>>  {l :    90
         ||||||||||||||||||||||||||{|}           4292 bp           {|
         erSerSerLeuLysPheValProLys{G}++                         ++{l
 20400 : GCAGCTCTCTCAAGTTCGTCCCTAAA{G}gt.........................ag{G : 24719

    91 : y}GluProAlaSer :    94
         |}:!! !!||||||
         y}GlnAlaAlaSer
 24720 : A}CAAGCTGCCTCT : 24732

vulgar: SPP00000219_2.0 1 94 . KQ751406.1:subseq(83443,40431) 2042 24732 + 424 M 2 6 S 0 1 5 0 2 I 0 17950 3 0 2 S 1 2 M 47 141 5 0 2 I 0 161 3 0 2 M 38 114 S 0 1 5 0 2 I 0 4288 3 0 2 S 1 2 M 4 12
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	gene	2043	24732	424	+	.	gene_id 1 ; sequence SPP00000219_2.0 ; gene_orientation +
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	cds	2043	2049	.	+	.	
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	exon	2043	2049	.	+	.	insertions 0 ; deletions 0
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	splice5	2050	2051	.	+	.	intron_id 1 ; splice_site "gt"
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	intron	2050	20003	.	+	.	intron_id 1
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	splice3	20002	20003	.	+	.	intron_id 0 ; splice_site "AG"
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	cds	20004	20146	.	+	.	
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	exon	20004	20146	.	+	.	insertions 0 ; deletions 0
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	splice5	20147	20148	.	+	.	intron_id 2 ; splice_site "GT"
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	intron	20147	20311	.	+	.	intron_id 2
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	splice3	20310	20311	.	+	.	intron_id 1 ; splice_site "AG"
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	cds	20312	20426	.	+	.	
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	exon	20312	20426	.	+	.	insertions 0 ; deletions 0
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	splice5	20427	20428	.	+	.	intron_id 3 ; splice_site "GT"
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	intron	20427	24718	.	+	.	intron_id 3
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	splice3	24717	24718	.	+	.	intron_id 2 ; splice_site "AG"
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	cds	24719	24732	.	+	.	
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	exon	24719	24732	.	+	.	insertions 0 ; deletions 0
KQ751406.1:subseq(83443,40431)	exonerate:protein2genome:local	similarity	2043	24732	424	+	.	alignment_id 1 ; Query SPP00000219_2.0 ; Align 2043 2 6 ; Align 20006 5 141 ; Align 20312 52 114 ; Align 24721 91 12
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis