Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q GP3_anole.fa -t KQ756805ext.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000197_2.0 Target: KQ756805.1:subseq(187340,23886) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold2607, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 824 Query range: 0 -> 191 Target range: 13886 -> 9999 1 : PheGlnValAspCysTyrAspSerIleProGlyThrValTyrAsnTyrGlyAlaLeuSer : 20 |||||||||...|||::!||||||:!! !|||||||||||||||||||||||||||!!! PheGlnValSerCysHisAspSerValAspGlyThrValTyrAsnTyrGlyAlaLeuThr 13886 : ttccaggtcagctgccaTGACTCAGTAGATGGAACAGTCTATAACTATGGGGCCCTTACC : 13829 21 : IleHisGlyAspGluTyrIleProPheGlnLysTyrAlaGlyLysLeuLeuLeuPheVal : 40 ||| !!|||||||||||||||||||||!:!::!|||||||||||||||:!!||||||||| IleAspGlyAspGluTyrIleProPheArgArgTyrAlaGlyLysLeuIleLeuPheVal 13828 : ATAGATGGTGATGAGTACATCCCCTTCCGGCGGTATGCTGGGAAGTTGATCCTCTTTGTC : 13769 41 : AsnValAlaThrTyrUnkGlyLeuThrMetGlnTyrLeu{G} >>>> Target Intr : 54 |||||||||:!!||| |||||||||||||||||||||{|} 936 bp AsnValAlaSerTyr***GlyLeuThrMetGlnTyrLeu{G}++ 13768 : AATGTGGCCTCCTACTGAGGACTCACAATGCAGTACCTT{G}gt................ : 13724 55 : on 1 >>>> {lu}LeuAsnAlaLeuGlnThrGluLeuGlyArgTyrGlyLeuValVal : 69 {||}||||||||||||||||||..!||||||! !||||||||||||:!! ++{lu}LeuAsnAlaLeuGlnThrSerLeuGlyProTyrGlyLeuValIle 13723 : .........ag{AA}CTGAATGCACTACAAACTTCACTGGGGCCTTACGGCCTAGTCATC : 12746 70 : LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeu : 89 ||||||||||||! !|||!!.|||||||||||||||||||||||||||!:!||||||||| LeuGlyPheProSerAsnHisPheGlyLysGlnGluProGlyGluAsnAsnGluIleLeu 12745 : CTGGGCTTTCCATCCAATCATTTTGGAAAACAAGAACCTGGCGAGAACAATGAAATCCTT : 12686 90 : ProGlyLeu{Ar} >>>> Target Intron 2 >>>> {g}TyrValArgProGly : 98 !..!|||{!:} 545 bp {!}||||||||||||||| AsnSerLeu{Ly}++ ++{s}TyrValArgProGly 12685 : AACTCGTTG{AA}gt.........................ag{A}TATGTAAGACCCGGG : 12114 99 : GlyGlyPheThrProAsnPheGlnLeuPheGlnLysGlyAspValAsnGlyGluThrGlu : 118 |||||||||..!||||||||||||||||||||||||!.!|||||||||||||||! !||| GlyGlyPheValProAsnPheGlnLeuPheGlnLysAlaAspValAsnGlyGluLysGlu 12113 : GGAGGCTTTGTCCCAAATTTCCAGCTCTTTCAAAAAGCAGATGTGAATGGGGAGAAAGAA : 12054 119 : GlnArgValTyrThrPheLeuLys >>>> Target Intron 3 >>>> AsnSerC : 129 |||!:!:!!||||||||||||||| 1830 bp |||:!!| GlnLysIleTyrThrPheLeuLys++ ++AsnAlaC 12053 : CAAAAGATCTATACCTTTCTAAAGgt.........................agAACGCCT : 10191 130 : ysProProValIleGluAsnPheGlyAsp<->ProAsnLysLeuPheTrpSerProLeuL : 148 |||||||||||! !!!:!:!||||||||| |||...!:!||||||||| !||||||| ysProProValThrAspSerPheGlyAspValProGlyArgLeuPheTrpHisProLeuL 10190 : GTCCACCTGTTACAGATAGCTTTGGTGATGTTCCTGGGAGACTTTTCTGGCATCCTCTGA : 10131 149 : ysIleHisAspIleLysTrpAsnPheGluLysPheLeuValGlyThrAspGlyLysProV : 168 |||||||||||||||||||||||||||||||||||||||||.!!|||!!:|||||||||| ysIleHisAspIleLysTrpAsnPheGluLysPheLeuValSerThrGluGlyLysProV 10130 : AGATCCATGATATCAAGTGGAATTTTGAGAAGTTTCTGGTCAGTACAGAAGGGAAGCCTG : 10071 169 : alMetArgTrpTyrHisArgThrAsnValAlaThrValLysSerAspIleLeuArgTyrM : 188 ||:!!||||||||||||!:!|||||||||||||||||||||!:!||||||:!!!:!|||| alLeuArgTrpTyrHisLysThrAsnValAlaThrValLysAsnAspIleIleGlnTyrM 10070 : TGCTGAGATGGTATCACAAGACTAACGTTGCCACGGTGAAGAATGACATCATACAATATA : 10011 189 : etArgLysGln : 191 ||!:!:!!||| etLysGluGln 10010 : TGAAGGAGCAG : 10000 vulgar: SPP00000197_2.0 0 191 . KQ756805.1:subseq(187340,23886) 13886 9999 - 824 M 53 159 S 0 1 5 0 2 I 0 932 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 541 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1826 3 0 2 M 12 36 G 0 3 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-07 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local gene 10000 13886 824 - . gene_id 1 ; sequence SPP00000197_2.0 ; gene_orientation + KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local cds 13727 13886 . - . KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local exon 13727 13886 . - . insertions 0 ; deletions 0 KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local splice5 13725 13726 . - . intron_id 1 ; splice_site "GT" KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local intron 12791 13726 . - . intron_id 1 KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local splice3 12791 12792 . - . intron_id 0 ; splice_site "AG" KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local cds 12673 12790 . - . KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local exon 12673 12790 . - . insertions 0 ; deletions 0 KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local splice5 12671 12672 . - . intron_id 2 ; splice_site "GT" KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local intron 12128 12672 . - . intron_id 2 KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local splice3 12128 12129 . - . intron_id 1 ; splice_site "AG" KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local cds 12028 12127 . - . KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local exon 12028 12127 . - . insertions 0 ; deletions 0 KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local splice5 12026 12027 . - . intron_id 3 ; splice_site "GT" KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local intron 10198 12027 . - . intron_id 3 KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local splice3 10198 10199 . - . intron_id 2 ; splice_site "AG" KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local cds 10000 10197 . - . KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local exon 10000 10197 . - . insertions 3 ; deletions 0 KQ756805.1:subseq(187340,23886) exonerate:protein2genome:local similarity 10000 13886 824 - . alignment_id 1 ; Query SPP00000197_2.0 ; Align 13887 1 159 ; Align 12789 55 114 ; Align 12127 94 99 ; Align 10198 127 36 ; Align 10159 139 159 # --- END OF GFF DUMP --- # -- completed exonerate analysis