Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q GPx2_anole.fa -t GPx2extraccio.fa] Hostname: [ws101066u] C4 Alignment: ------------ Query: GPx2_anole.fa Target: KQ751320.1:subseq(33912,24635) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold446, whole genome shotgun sequence Model: protein2genome:local Raw score: 954 Query range: 0 -> 189 Target range: 9999 -> 14635 1 : MetThrProIleAlaLysSerPheTyrAspLeuAsnAlaThrAspLeuGlnGlyGluLys : 20 |||||||||:!!|||||||||||||||||||||!:!||||||||||||!!.||||||||| MetThrProValAlaLysSerPheTyrAspLeuSerAlaThrAspLeuHisGlyGluLys 10000 : ATGACTCCCGTAGCCAAATCCTTTTATGACCTGAGTGCCACTGACCTCCATGGGGAAAAG : 10057 21 : ValAspPheAsnAsnPheArgGlyArgValValLeuIleGluAsnValAlaSerLeuUnk : 40 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ValAspPheAsnAsnPheArgGlyArgValValLeuIleGluAsnValAlaSerLeu*** 10058 : GTGGATTTCAACAATTTCAGGGGGAGAGTGGTGTTGATAGAGAATGTGGCCTCCCTCTGA : 10117 41 : GlyThrThrValArgAspTyrThrGlnMetAsnLeuLeuGlnSerLysTyrProArgArg : 60 ||||||.!!|||||||||||||||!!.||||||! !|||||||||||||||||||||||| GlyThrAlaValArgAspTyrThrHisMetAsnGlnLeuGlnSerLysTyrProArgArg 10118 : GGCACAGCCGTGAGGGACTACACCCACATGAACCAGCTGCAGAGTAAATATCCTCGGCGG : 10177 61 : LeuValValLeuGlyPheProCysAsnGlnPheGlyTyrGln >>>> Target Intr : 75 |||:!!|||||||||||||||||||||||||||||||||||| 4069 bp LeuIleValLeuGlyPheProCysAsnGlnPheGlyTyrGln++ 10178 : CTGATTGTGCTGGGGTTCCCTTGCAACCAGTTTGGCTACCAGgt................ : 10224 76 : on 1 >>>> GluAsnCysThrAsnGluGluIleLeuAsnSerLeuLysHisValArgP : 91 |||||||||||||||||||||||||||||||||||||||:!!||||||| ++GluAsnCysThrAsnGluGluIleLeuAsnSerLeuLysTyrValArgP 10225 : .........agGAGAACTGCACTAACGAAGAGATCCTCAACAGCTTGAAATACGTGCGAC : 14339 92 : roGlySerGlyPheGluProAsnPheThrLeuCysGlnLysCysGluValAsnGlyLysA : 111 ||||||||!.!|||||||||||||||! !||||||||||||||||||||||||||||||| roGlySerAlaPheGluProAsnPheIleLeuCysGlnLysCysGluValAsnGlyLysA 14340 : CTGGGTCTGCATTTGAACCCAATTTCATACTTTGCCAGAAATGTGAGGTGAATGGCAAGA : 14399 112 : snThrHisSerValPheAlaTyrLeuLysAspLysLeuProTyrProAspAspAsnProS : 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| snThrHisSerValPheAlaTyrLeuLysAspLysLeuProTyrProAspAspAsnProS 14400 : ACACCCACTCTGTCTTTGCCTACCTGAAGGACAAACTTCCATACCCAGACGACAACCCCT : 14459 132 : erCysLeuMetMetGluProLysPheIleLeuTrpSerProValSerArgAsnAspIleS : 151 |||||||||||||||||||||||||||||:!!||||||||||||! !||||||||||||| erCysLeuMetMetGluProLysPheIleIleTrpSerProValTyrArgAsnAspIleS 14460 : CCTGCTTGATGATGGAACCCAAGTTCATCATATGGAGCCCAGTATATCGCAATGACATCT : 14519 152 : erTrpAsnPheGluLysPheLeuValGlyProGluGlyGluProPheLysArgTyrSerP : 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| erTrpAsnPheGluLysPheLeuValGlyProGluGlyGluProPheLysArgTyrSerP 14520 : CCTGGAACTTCGAGAAGTTCCTTGTGGGGCCTGAAGGGGAGCCTTTCAAGCGTTATAGCC : 14579 172 : roArgPheLeuThrThrAsnIleGluProAspIleGlnArgLeuLeuLysLeuAla : 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| roArgPheLeuThrThrAsnIleGluProAspIleGlnArgLeuLeuLysLeuAla 14580 : CCAGATTCCTCACCACCAACATTGAGCCTGACATTCAACGACTCCTGAAGCTTGCC : 14635 vulgar: GPx2_anole.fa 0 189 . KQ751320.1:subseq(33912,24635) 9999 14635 + 954 M 74 222 5 0 2 I 0 4065 3 0 2 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-07 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ751320.1:subseq(33912,24635) exonerate:protein2genome:local gene 10000 14635 954 + . gene_id 1 ; sequence GPx2_anole.fa ; gene_orientation + KQ751320.1:subseq(33912,24635) exonerate:protein2genome:local cds 10000 10221 . + . KQ751320.1:subseq(33912,24635) exonerate:protein2genome:local exon 10000 10221 . + . insertions 0 ; deletions 0 KQ751320.1:subseq(33912,24635) exonerate:protein2genome:local splice5 10222 10223 . + . intron_id 1 ; splice_site "GT" KQ751320.1:subseq(33912,24635) exonerate:protein2genome:local intron 10222 14290 . + . intron_id 1 KQ751320.1:subseq(33912,24635) exonerate:protein2genome:local splice3 14289 14290 . + . intron_id 0 ; splice_site "AG" KQ751320.1:subseq(33912,24635) exonerate:protein2genome:local cds 14291 14635 . + . KQ751320.1:subseq(33912,24635) exonerate:protein2genome:local exon 14291 14635 . + . insertions 0 ; deletions 0 KQ751320.1:subseq(33912,24635) exonerate:protein2genome:local similarity 10000 14635 954 + . alignment_id 1 ; Query GPx2_anole.fa ; Align 10000 1 222 ; Align 14291 75 345 # --- END OF GFF DUMP --- # -- completed exonerate analysis