Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q DIO2_anole.fa -t DIO2extraccio1.fa]
Hostname: [ws101065u]

C4 Alignment:
------------
         Query: SPP00000195_2.0 # Protein # Iodothyronine deiodinase 2 (DIO2) # Anole lizard 
        Target: KQ757544.1:subseq(1013513,117119) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold368, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1266
   Query range: 0 -> 266
  Target range: 49999 -> 67119

     1 : MetGlyLeuLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProIlePhePheSer :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||
         MetGlyLeuLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSer
 50000 : ATGGGTCTGTTAAGCGTGGACCTGTTGATCACACTGCAGATCCTGCCGGTTTTCTTCTCC : 50057

    21 : AsnCysLeuPheLeuAlaLeuTyrAspSerValValLeuLeuLysHisMetValLeuLeu :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnCysLeuPheLeuAlaLeuTyrAspSerValValLeuLeuLysHisMetValLeuLeu
 50058 : AATTGCCTCTTCCTTGCACTCTATGATTCGGTGGTCCTCTTGAAGCACATGGTGCTTCTT : 50117

    41 : LeuSerArgSerLysAlaAlaArgGlyGluTrpArgArgMetLeuThrSerGluGlyLeu :    60
         |||||||||||||||:!!||||||||||||||||||||||||||||||||||||||||||
         LeuSerArgSerLysSerAlaArgGlyGluTrpArgArgMetLeuThrSerGluGlyLeu
 50118 : CTGAGTCGCTCCAAATCTGCACGTGGTGAGTGGCGAAGGATGCTGACATCGGAGGGGCTG : 50177

    61 : ArgCysValTrpAsnSerPheLeuLeuAspAlaTyrLysGln  >>>> Target Intr :    75
         ||||||||||||||||||||||||||||||||||||||||||           16331 b
         ArgCysValTrpAsnSerPheLeuLeuAspAlaTyrLysGln++                
 50178 : CGCTGCGTCTGGAATAGCTTCCTCCTAGATGCCTACAAACAGgt................ : 50224

    76 : on 1 >>>>  ValLysLeuGlyGlyGluAlaProAsnSerAsnValIleHisIleProS :    91
         p          ||||||||||||||||||||||||||||||||||||||||||||| !!!
                  ++ValLysLeuGlyGlyGluAlaProAsnSerAsnValIleHisIleAlaA
 50225 : .........agGTGAAACTTGGTGGAGAAGCTCCTAACTCCAATGTGATTCACATTGCTA : 66601

    92 : erGlyThrGlyAspAsnSerAsnSerSerSerArgTrpLysAsnSerSerGlyArgTyrG :   111
         :!||||||! !!!:         |||!!!!!!|||||||||!:!|||||||||!:!||||
         snGlyThrAspGlu---------SerThrThrArgTrpLysSerSerSerGlyLysTyrG
 66602 : ATGGCACTGATGAG---------AGCACCACCAGATGGAAAAGCTCCAGTGGGAAGTATG : 66652

   112 : lyMetGluCysHisLeuLeuAspPheAlaLysSerGluArgProLeuValValAsnPheG :   131
         ||!  ||||||||||||||||||||||||...||||||||||||||||||||||||||||
         lyThrGluCysHisLeuLeuAspPheAlaSerSerGluArgProLeuValValAsnPheG
 66653 : GAACTGAATGTCACCTTCTAGACTTTGCCTCTTCGGAGCGTCCATTAGTAGTCAACTTTG : 66712

   132 : lySerAlaThrUnkProProPheThrAsnGlnLeuSerAlaPheGlyLysLeuValGluG :   151
         |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
         lySerAlaThr***ProProPheThrAsnGlnLeuSerAlaPheGlyLysLeuValGluG
 66713 : GCTCAGCCACCTGACCCCCCTTCACAAACCAGCTGTCGGCCTTCGGCAAGCTGGTGGAAG : 66772

   152 : luPheSerSerValAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspG :   171
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         luPheSerSerValAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspG
 66773 : AGTTCTCCAGTGTGGCTGACTTTCTGTTAGTCTACATTGATGAGGCTCACCCATCAGATG : 66832

   172 : lyTrpAlaAlaProGlyValSerSerSerPheGluValLysLysHisArgAsnGlnGluA :   191
         ||||||||||||||||||||||||||||||||!!:|||||||||||||||||||||||||
         lyTrpAlaAlaProGlyValSerSerSerPheAspValLysLysHisArgAsnGlnGluA
 66833 : GCTGGGCTGCTCCTGGTGTCTCGTCCTCCTTTGATGTAAAGAAACAcaggaaccaagaag : 66892

   192 : spArgCysAlaAlaAlaHisGlnLeuLeuLysArgPheSerLeuProProGlnCysGlnI :   211
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         spArgCysAlaAlaAlaHisGlnLeuLeuLysArgPheSerLeuProProGlnCysGlnI
 66893 : acagatgtGCAGCTGCTCACCAGCTCCTGAAGCGTTTTTCTTTGCCACCTCAGTGCCAGA : 66952

   212 : leValAlaAspCysMetAspAsnAsnAlaAsnValAlaTyrGlyValSerPheGluArgV :   231
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         leValAlaAspCysMetAspAsnAsnAlaAsnValAlaTyrGlyValSerPheGluArgV
 66953 : TCGTGGCAGACTGCATGGACAATAATGCCAATGTGGCCTATGGTGTCTCCTTTGAGCGTG : 67012

   232 : alCysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPhePheTyrA :   251
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         alCysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPhePheTyrA
 67013 : TGTGCATAGTACAAAGACAAAAAATTGCCTACCTGGGGGGCAAGGGTCCCTTTTTCTACA : 67072

   252 : snLeuGlnGluValArgLeuTrpLeuGluGlnAsnPheArgLysArg :   266
         ||||||||||||||||||||||||||||||||||||||!:!! !|||
         snLeuGlnGluValArgLeuTrpLeuGluGlnAsnPheLysThrArg
 67073 : ATCTCCAAGAAGTTCGACTTTGGTTGGAGCAGAACTTTAAGACGAGA : 67119

vulgar: SPP00000195_2.0 0 266 . KQ757544.1:subseq(1013513,117119) 49999 67119 + 1266 M 74 222 5 0 2 I 0 16327 3 0 2 M 21 63 G 3 0 M 168 504
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-07
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ757544.1:subseq(1013513,117119)	exonerate:protein2genome:local	gene	50000	67119	1266	+	.	gene_id 1 ; sequence SPP00000195_2.0 ; gene_orientation +
KQ757544.1:subseq(1013513,117119)	exonerate:protein2genome:local	cds	50000	50221	.	+	.	
KQ757544.1:subseq(1013513,117119)	exonerate:protein2genome:local	exon	50000	50221	.	+	.	insertions 0 ; deletions 0
KQ757544.1:subseq(1013513,117119)	exonerate:protein2genome:local	splice5	50222	50223	.	+	.	intron_id 1 ; splice_site "GT"
KQ757544.1:subseq(1013513,117119)	exonerate:protein2genome:local	intron	50222	66552	.	+	.	intron_id 1
KQ757544.1:subseq(1013513,117119)	exonerate:protein2genome:local	splice3	66551	66552	.	+	.	intron_id 0 ; splice_site "AG"
KQ757544.1:subseq(1013513,117119)	exonerate:protein2genome:local	cds	66553	67119	.	+	.	
KQ757544.1:subseq(1013513,117119)	exonerate:protein2genome:local	exon	66553	67119	.	+	.	insertions 0 ; deletions 3
KQ757544.1:subseq(1013513,117119)	exonerate:protein2genome:local	similarity	50000	67119	1266	+	.	alignment_id 1 ; Query SPP00000195_2.0 ; Align 50000 1 222 ; Align 66553 75 63 ; Align 66616 99 504
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis