Command line: [exonerate -m p2g --showtargetgff -q SelU1a/SelU1a_x.fa -t SelU1a/SUBSEQ/CM004426.1_5_subseq.txt --exhaustive]
Hostname: [ws101122u]

C4 Alignment:
------------
         Query: SPP00000652_2.0  Protein  Selenoprotein X1a (SELENOX1a)  Zebrafish 
        Target: CM004426.1:subseq(2597757,25152) Ictalurus punctatus breed USDA103 chromosome 13, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 559
   Query range: 56 -> 222
  Target range: 25110 -> 22547

    57 : LeuLysThrIleAspGlyAspGluArgSerLeuLysAlaLysAlaLeuTrpGluLysSer :    76
         :::!!.|||  !|||!.!!!:|||!:!|||!!!||||||   .!!||||||||||||!!!
         ValAsnThrGlyAspAlaGluGluLysSerPheLysAlaPheThrLeuTrpGluLysThr
 25110 : gtgAACACTGGAGACGCAGAGGAGAAGAGCTTTAAAGCGTTCACACTCTGGGAGAAAACC : 25053

    77 : GlyAlaValIleMetAlaValArgArgProGlyUnkPheLeuCysArgGlu  >>>> Ta :    94
         |||||||||||||||||||||||||||||||||   ! !||||||||||||         
         GlyAlaValIleMetAlaValArgArgProGly***SerLeuCysArgGlu++       
 25052 : GGAGCCGTGATCATGGCCGTCAGAAGACCTGGATGATCTTTGTGCAGagaggt....... : 24997

    95 : rget Intron 1 >>>>  GluAlaSerGluLeuSerSerLeuLysProGlnLeuAspG :   107
           1292 bp           ||||||||||||||||||||||||||||||||||||||||
                           ++GluAlaSerGluLeuSerSerLeuLysProGlnLeuAspG
 24996 : ..................agGAAGCCTCTGAGCTGTCCTCTCTGAAGCCTCAGCTGGATG : 23668

   108 : luLeuGlyValProLeuTyrAlaValValLysGluAsnValGlyThrGluIleGlnAspP :   127
         ||:!!|||||||||||||||||||||||||||||||||:!!|||||||||||||||:!!|
         luValGlyValProLeuTyrAlaValValLysGluAsnIleGlyThrGluIleGlnAsnP
 23667 : AGGTCGGTGTTCCTCTGTACGCGGTGGTGAAAGAGAACATCGGTACAGAGATACAAAACT : 23608

   128 : heArgProHisPheAlaGlyGluIlePheLeuAspGluLys  >>>> Target Intro :   141
         ||||||||:!!|||::!||||||||||||||||||||||||            687 bp 
         heArgProTyrPheSerGlyGluIlePheLeuAspGluLys++                 
 23607 : TCAGACCCTACTTCAGCGGAGAAATCTTCCTGGATGAGAAGgt................. : 23564

   142 : n 2 >>>>  GlnAlaPheTyrGlyProGlnGlnArgLysMetGlyGlyLeuGlyPheIl :   157
                   |||  !||||||  !|||::!:!!|||! !|||! !  !|||||||||! 
                 ++GlnLeuPheTyrThrProArgLysArgMetMetValLysLeuGlyPheTh
 23563 : ........agCAATTATTTTACACTCCCAGGAAGAGGATGATGGTGAAACTGGGCTTCAC : 22831

   158 : eArgLeuGlyValTrpGlnAsnPheValArgAlaTrpArgAlaGlyTyrGlnGlyAsnMe :   177
         !|||:!!.!!||||||::!|||.!!:!!||||||    !!  !|||||||||||||||||
         rArgIleSerValTrpArgAsnIleLeuArgAlaAsnTrpLysGlyTyrGlnGlyAsnMe
 22830 : TCGTATCAGCGTGTGGAGGAACATCCTGCGCGCAAATTGGAAAGGTTACCAGGGCAACAT : 22771

   178 : tAsnGlyGluGlyPheIleLeuGlyGlyValPheValMetGlySerGlyGlyGln  >>> :   196
         |!!.||||||||||||||||||||||||:!!!:!|||!!:||| !!! !..!|||     
         tLysGlyGluGlyPheIleLeuGlyGlyLeuTyrValIleGlyProGluAsnGln++   
 22770 : GAAAGGGGAGGGGTTTATACTTGGAGGCCTTTATGTGATTGGTCCAGAGAATCAGgt... : 22712

   197 : > Target Intron 3 >>>>  GlyValLeuLeuGluHisArgGluLysGluPheGly :   207
                86 bp            |||:!!|||:!!||||||!:!|||||||||||||||
                               ++GlyIleLeuMetGluHisGlnGluLysGluPheGly
 22711 : ......................agGGTATTTTAATGGAGCACCAGGAGAAGGAGTTTGGC : 22595

   208 : AspLysValSerLeuGluSerValLeuGluAlaAlaLysLysVal :   222
         ||||||!.!..!|||.!.|||||||||.!.|||!.!! !||||||
         AspLysAlaAspLeuAsnSerValLeuHisAlaValMetLysVal
 22594 : GATAAAGCTGATCTCAATTCAGTGTTACACGCAGTAATGAAAGTG : 22548

vulgar: SPP00000652_2.0 56 222 . CM004426.1:subseq(2597757,25152) 25110 22547 - 559 M 37 111 5 0 2 I 0 1288 3 0 2 M 47 141 5 0 2 I 0 683 3 0 2 M 55 165 5 0 2 I 0 82 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	gene	22548	25110	559	-	.	gene_id 1 ; sequence SPP00000652_2.0 ; gene_orientation +
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	cds	25000	25110	.	-	.	
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	exon	25000	25110	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	splice5	24998	24999	.	-	.	intron_id 1 ; splice_site "gt"
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	intron	23708	24999	.	-	.	intron_id 1
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	splice3	23708	23709	.	-	.	intron_id 0 ; splice_site "ag"
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	cds	23567	23707	.	-	.	
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	exon	23567	23707	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	splice5	23565	23566	.	-	.	intron_id 2 ; splice_site "GT"
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	intron	22880	23566	.	-	.	intron_id 2
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	splice3	22880	22881	.	-	.	intron_id 1 ; splice_site "AG"
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	cds	22715	22879	.	-	.	
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	exon	22715	22879	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	splice5	22713	22714	.	-	.	intron_id 3 ; splice_site "GT"
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	intron	22629	22714	.	-	.	intron_id 3
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	splice3	22629	22630	.	-	.	intron_id 2 ; splice_site "AG"
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	cds	22548	22628	.	-	.	
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	exon	22548	22628	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(2597757,25152)	exonerate:protein2genome:local	similarity	22548	25110	559	-	.	alignment_id 1 ; Query SPP00000652_2.0 ; Align 25111 57 111 ; Align 23708 94 141 ; Align 22880 141 165 ; Align 22629 196 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis