Command line: [exonerate -m p2g --showtargetgff -q SELENOU.fa -t genomic.fa]
Hostname: [ws101074U]

C4 Alignment:
------------
         Query: SPP00000116_2.0 # Protein # Selenoprotein U3 (SELENOU3) # Human 
        Target: CM004434.1:subseq(10920000,150000) Ictalurus punctatus breed USDA103 chromosome 21, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 277
   Query range: 50 -> 138
  Target range: 696 -> 157

  51 : GluAlaValGluLeuArgSerLeuTrpArgGluHisAlaCysValValAlaGlyLeuArgArgP :  72
       :!!  !||||||||| !!|||||||||!:!!!: ! .!!   |||:!!  !  !||||||||||
       GlnHisValGluLeuGlySerLeuTrpLysAspLysThrValValMetPhePheLeuArgArgP
 696 : CAGCATGTGGAGCTCGGCTCTTTATGGAAAGATAAGACAGTGGTGATGTTTTTCCTGCGCCGCT : 633

  73 : heGlyCysValValCysArgTrpIleAlaGlnAspLeuSerSerLeuAlaGlyLeuLeuAspGl :  93
       ||||||||  !:!!|||||||||  !|||   !!::!!|||!.!|||! !  !  !|||   :!
       heGlyCysGlnIleCysArgTrpAlaAlaAlaGluValSerLysLeuGluLysAspLeuArgGl
 632 : TTGGCTGTCAGATCTGTCGCTGGGCTGCAGCCGAGGTCAGTAAGCTGGAGAAGGACCTGAGAGA : 570

  94 : nHisGlyValArgLeuValGlyValGlyProGluAlaLeuGlyLeuGlnGluPheLeuAspGly : 114
       !:!!||||||  !|||:!!|||:!!|||||||||! !  !|||||||||||||||  !||||||
       uAsnGlyValAlaLeuIleGlyIleGlyProGluGluThrGlyLeuGlnGluPheLysAspGly
 569 : GAATGGAGTGGCCCTCATTGGAATCGGCCCTGAAGAGACAGGACTCCAGGAGTTTAAGGATGGC : 507

 115 : AspTyrPheAlaGly{G}  >>>> Target Intron 1 >>>>  {lu}LeuTyrLeuAspG : 125
       ! !!:!|||  !|||{|}            275 bp           {||}:!!|||:!!||||
       GlyPhePheLysGly{G}++                         ++{lu}IleTyrIleAspG
 506 : GGCTTCTTTAAAGGA{G}gt.........................ag{aa}ATATACATCGATG : 199

 126 : luSerLysGlnLeuTyrLysGluLeuGlyPheLysArgTyr : 138
       ||!.!||||||! !|||||||||||||||||||||||||||
       luLysLysGlnCysTyrLysGluLeuGlyPheLysArgTyr
 198 : AAAAGAAGCAGTGCTACAAGGAGTTAGGATTTAAAAGGTAC : 158

vulgar: SPP00000116_2.0 50 138 . CM004434.1:subseq(10920000,150000) 696 157 - 277 M 69 207 S 0 1 5 0 2 I 0 271 3 0 2 S 1 2 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004434.1:subseq(10920000,150000)	exonerate:protein2genome:local	gene	158	696	277	-	.	gene_id 1 ; sequence SPP00000116_2.0 ; gene_orientation +
CM004434.1:subseq(10920000,150000)	exonerate:protein2genome:local	cds	489	696	.	-	.	
CM004434.1:subseq(10920000,150000)	exonerate:protein2genome:local	exon	489	696	.	-	.	insertions 0 ; deletions 0
CM004434.1:subseq(10920000,150000)	exonerate:protein2genome:local	splice5	487	488	.	-	.	intron_id 1 ; splice_site "GT"
CM004434.1:subseq(10920000,150000)	exonerate:protein2genome:local	intron	214	488	.	-	.	intron_id 1
CM004434.1:subseq(10920000,150000)	exonerate:protein2genome:local	splice3	214	215	.	-	.	intron_id 0 ; splice_site "ag"
CM004434.1:subseq(10920000,150000)	exonerate:protein2genome:local	cds	158	213	.	-	.	
CM004434.1:subseq(10920000,150000)	exonerate:protein2genome:local	exon	158	213	.	-	.	insertions 0 ; deletions 0
CM004434.1:subseq(10920000,150000)	exonerate:protein2genome:local	similarity	158	696	277	-	.	alignment_id 1 ; Query SPP00000116_2.0 ; Align 697 51 207 ; Align 212 121 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis