Command line: [exonerate -m p2g --showtargetgff -q SelO1/SelO1_x.fa -t SelO1/SUBSEQ/CM004417.1_0_subseq.txt --exhaustive] Hostname: [ws101126u] C4 Alignment: ------------ Query: SPP00000640_2.0 Protein Selenoprotein O1 (SELENOO1) Zebrafish Target: CM004417.1:subseq(9986433,75602) Ictalurus punctatus breed USDA103 chromosome 4, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 2541 Query range: 0 -> 692 Target range: 25602 -> 16784 1 : MetAlaSerValGlySerArgLeuThrArgPheTyrIleSerArgProGlyValIleAla : 20 ||||||||| !! ! !||||||! !||| !||||||! !!.! !!..! ! ! ! MetAlaSerAsnValLeuArgLeuIleArgProTyrIlePheAsnSerAsnProGlyLeu 25602 : ATGGCTAGCAATGTACTCCGTCTAATACGACCTTACATTTTCAACTCTAACCCCGGTTTG : 25545 21 : ArgArgPheLeuAlaHisAlaGlyMetAspAspMetGlyValSerLeuSerArgSerSer : 40 !|||! !! !:!! ! !|||||| ! !! !!.!:!!:!! !|||||||||!.! LeuArgSerTyrSerMetGluGlyMet---GlyThrAlaIleAlaThrSerArgSerLys 25544 : TTGAGGTCTTACTCCATGGAGGGTATG---GGCACGGCGATCGCGACGAGTCGTTCCAAG : 25488 41 : LeuGluArgLeuGluPheAspAsnValAlaLeuLysLysLeuProLeuAspProSerThr : 60 ||||||||||||!!:||||||||||||!.!|||!:!|||||||||:!!!!: !||| ! LeuGluArgLeuAspPheAspAsnValValLeuArgLysLeuProValGluGluSerGlu 25487 : CTCGAGCGGCTGGACTTCGATAATGTCGTGCTGAGAAAGCTCCCTGTGGAGGAGTCGGAG : 25428 61 : GluProGlyValArgGlnValArgGlySerCysPheSerArgValGlnProThrProLeu : 80 ! |||||||||||| !|||||||||:!!|||||||||||||||..!||| !|||||| AlaProGlyValArgThrValArgGlyAlaCysPheSerArgValMetProGlnProLeu 25427 : GCTCCTGGAGTGAGGACAGTCCGCGGCGCGTGTTTCTCCAGAGTCATGCCGCAGCCGCTG : 25368 81 : LysAsnProGluPheValAlaValSerAlaProAlaLeuAlaLeuLeuGlyLeuAspAla : 100 :!!!!.|||...|||||||||||||||!.!||||||:!!|||||||||||||||..!||| GluLysProArgPheValAlaValSerGlyProAlaMetAlaLeuLeuGlyLeuSerAla 25367 : GAGAAGCCTCGCTTTGTGGCGGTTTCCGGACCCGCCATGGCGCTGCTCGGCCTCAGCGCG : 25308 101 : GluGluValLeuLysAspProLeuGlyProGluTyrLeuSerGlySerLysValMetPro : 120 |||||||||:!!!..|||||||||||| !!! !|||||||||||||||!:!||||||||| GluGluValIleSerAspProLeuGlyAlaValTyrLeuSerGlySerArgValMetPro 25307 : GAGGAGGTAATCAGTGACCCTCTGGGCGCTGTGTACCTGAGCGGCTCCAGGGTGATGCCA : 25248 121 : GlySerGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyGlnPheAlaGlyGln : 140 |||||||||||||||||||||||||||||||||||||||||||||!!.|||||||||||| GlySerGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyHisPheAlaGlyGln 25247 : GGCTCTGAGCCCGCTGCCCACTGCTACTGCGGCCATCAGTTCGGCCACTTCGCGGGGCAG : 25188 141 : LeuGlyAspGlyAlaAlaCysTyrLeuGlyGluValLysAlaProAlaGlyGlnSerPro : 160 ||||||||||||||||||||||||||||||||||||||||||||||||! !||||||||| LeuGlyAspGlyAlaAlaCysTyrLeuGlyGluValLysAlaProAlaAspGlnSerPro 25187 : CTGGGCGACGGAGCGGCGTGTTATTTGGGTGAAGTGAAAGCTCCAGCTGATCAGAGTCCT : 25128 161 : GluLeuLeuArgGluAsnProThrGlyArgTrpGluIleGlnValLysGlyAlaGlyLeu : 180 |||||||||!:!|||||||||!:! !!|||||||||||||||:!!||||||:!!|||||| GluLeuLeuLysGluAsnProSerArgArgTrpGluIleGlnLeuLysGlySerGlyLeu 25127 : GAACTGCTAAAGGAGAACCCCAGCAGGCGCTGGGAGATCCAGCTGAAGGGTTCTGGACTC : 25068 181 : ThrProTyrSer{Ar} >>>> Target Intron 1 >>>> {g}GlnAlaAspGly : 189 ||||||||||||{||} 1295 bp {|}|||||||||||| ThrProTyrSer{Ar}++ ++{g}GlnAlaAspGly 25067 : ACGCCTTATTCC{AG}gt.........................ag{g}cAAGCGGATGGA : 23746 190 : ArgLysValLeuArgSerSerIleArgGluPheLeuCysSerGluAlaValPheAlaLeu : 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ArgLysValLeuArgSerSerIleArgGluPheLeuCysSerGluAlaValPheAlaLeu 23745 : CGTAAAGTCTTGCGCTCCAGCATCCGTGAGTTCTTGTGCAGCGAAGCTGTCTTTGCCCTT : 23686 210 : GlyValProThrThrArgAlaGlySerValValThrSerAspSerArgValMetArgAsp : 229 |||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||||| GlyIleProThrThrArgAlaGlySerValValThrSerAspSerArgValMetArgAsp 23685 : GGGATTCCTACCACACGGGCTGGCTCTGTAGTGACCTCAGACTCGCGGGTCATGAGAGAT : 23626 230 : IlePheTyrAspGlyAsnProArgMetGluArgCysSerValValLeuArgIleAlaPro : 249 :!:||||||:!!|||||||||||||||||||||||||||||||||||||||||||||||| ValPheTyrAsnGlyAsnProArgMetGluArgCysSerValValLeuArgIleAlaPro 23625 : GTGTTTTACAATGGCAATCCACGCATGGAGAGATGCTCGGTGGTGTTGCGCATCGCTCCC : 23566 250 : SerPheIle{Ar} >>>> Target Intron 2 >>>> {g}PheGlySerPheGlu : 258 !!!||||||{||} 161 bp {|}||||||||||||||| ThrPheIle{Ar}++ ++{g}PheGlySerPheGlu 23565 : ACTTTTATC{AG}gt.........................ag{G}TTTGGTTCATTTGAG : 23378 259 : IlePheLysArgAlaAspGluPheThrGlyArgGlnGlyProSerTyrGlyHisAspGlu : 278 |||||||||!:!! !||||||.!!|||||||||||||||||||||||| !!:!! !||| IlePheLysGlnGluAspGluLeuThrGlyArgGlnGlyProSerTyrArgTyrThrGlu 23377 : ATTTTCAAACAGGAGGATGAGCTCACAGGTCGGCAGGGCCCCAGCTATAGATATACTGAG : 23318 279 : LeuArgThrGlnMetLeuGluTyrValIleGluAsnPheTyrProGluIleHisArgAsn : 298 :!!|||||||||||||||!!:|||||||||!!:!.!|||||||||||||||!!.!:!!:! IleArgThrGlnMetLeuAspTyrValIleAspThrPheTyrProGluIleGlnGlnSer 23317 : ATACGAACTCAAATGCTGGATTATGTCATTGATACTTTCTACCCAGAGATCCAGCAGAGC : 23258 299 : TyrProAspLeuThrGluArgAsnThrAlaPhePheLysGlu >>>> Target Intr : 313 :!! !!|||! !..!|||||||||||||||||||||!:!||| 1137 bp HisSerAspProValGluArgAsnThrAlaPhePheArgGlu++ 23257 : CACTCAGACCCAGTGGAGCGGAACACTGCCTTCTTTAGGGAGgt................ : 23211 314 : on 3 >>>> ValThrValArgThrAlaArgLeuValAlaGlnTrpGlnCysValGlyP : 329 ||||||:!!|||||||||||||||||||||!!.|||||||||||||||| ++ValThrLeuArgThrAlaArgLeuValAlaHisTrpGlnCysValGlyP 23210 : .........aggTGACGCTAAGAACAGCCAGACTTGTGGCCCATTGGCAGTGTGTGGGAT : 22028 330 : heCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLeuThrLeuAspTyrG : 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| heCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLeuThrLeuAspTyrG 22027 : TCTGTCATGGAGTCCTCAATACTGATAATATGAGTATTCTGGGGCTTACACTGGACTATG : 21968 350 : lyProPheGlyPheMetAsp{Ar} >>>> Target Intron 4 >>>> {g}PheA : 358 ||||||||||||||||||||{||} 385 bp {|}|||| lyProPheGlyPheMetAsp{Ar}++ ++{g}PheA 21967 : GACCGTTCGGCTTCATGGAC{CG}gt.........................ag{C}TTTG : 21556 359 : spProAspPheIleCysAsnAlaSerAspAsnSerGlyArgTyrSerTyrGlnAlaGlnP : 378 |||||!!:||||||||||||||||||||||||||||||||||||||||||!:!||||||| spProGluPheIleCysAsnAlaSerAspAsnSerGlyArgTyrSerTyrArgAlaGlnP 21555 : ACCCAGAGTTCATCTGCAACGCCTCTGATAATTCTGGCCGTTACTCATATCGAGCTCAGC : 21496 379 : roAlaIleCysArgTrpAsnLeuAlaArgLeuAlaGluAlaLeuGluProAspLeuProP : 398 ||! !||||||!.!||||||||||||||||||||||||||||||.!.|||||||||||| roGluIleCysHisTrpAsnLeuAlaArgLeuAlaGluAlaLeuAsnProAspLeuProS 21495 : CAGAAATCTGTCACTGGAACCTGGCTCGGCTAGCAGAAGCTCTGAACCCAGATCTGCCCT : 21436 399 : roAspArgAlaGluGlnValLeuAspGluTyrLeuProLeuTyrAsnAspPheTyrLeuS : 418 !!|||||||||:!! !||||||!!:||||||! !||||||!:!||| |||||||||| erAspArgAlaGlnAlaValLeuGluGluTyrSerProLeuPheAsnThrPheTyrLeuS 21435 : CGGACCGGGCGCAGGCGGTGTTGGAGGAGTACTCGCCCCTCTTCAACACATTCTACTTGA : 21376 419 : erAsnMetArgLysLysLeuGlyLeuLeuArgLysGluGluProGluAspGluMetLeuI : 438 |||||||||||!:!|||||||||||||||||||||||||||||||||||||||:!!|||| erAsnMetArgArgLysLeuGlyLeuLeuArgLysGluGluProGluAspGluLeuLeuI 21375 : GCAATATGAGAAGGAAATTGGGCTTGCTGAGGAAAGAGGAACCAGAAGATGAGCTGCTCA : 21316 439 : leThrGluLeuMetGlnThrMetHisAsnThr{G} >>>> Target Intron 5 >> : 449 |||||.!.||||||||||||||||||||||||{|} 241 bp leThrAsnLeuMetGlnThrMetHisAsnThr{G}++ 21315 : TCACAAACCTAATGCAGACAATGCACAACACG{G}gt....................... : 21280 450 : >> {ly}AlaAspPheThrAsnThrPheArgSerLeuSerGlnIleSerCysProThrG : 467 {||}||||||||||||||||||||||||!!!|||||||||||||||||||||.!!: ++{ly}AlaAspPheThrAsnThrPheArgCysLeuSerGlnIleSerCysProAlaG 21279 : ..ag{GC}GCTGACTTCACCAACACGTTCCGCTGTTTGAGTCAGATCTCATGTCCTGCAG : 20988 468 : lnGluGluAlaGluAspGluSerGluThrIleLysGlnAlaThrGluLeuLeuLeuHisG : 487 !!! !!!:.!!! !!!:!!::!!||| !:!!||||||||||||||||||||||||!!.| luGlyAspThrValGluAspAlaGluLeuValLysGlnAlaThrGluLeuLeuLeuGlnG 20987 : AAGGAGACACAGTGGAGGATGCTGAACTTGTCAAACAGGCCACAGAGCTTCTGTTGCAGC : 20928 488 : lnSerAlaSerLeuGluGluLeuLysAlaAlaAsnArgProSerMetAspPro{Ar} > : 505 ||!!!|||||||||||||||||||||||||||!:!!:!|||!:!|||||||||{||} lnCysAlaSerLeuGluGluLeuLysAlaAlaSerLysProAsnMetAspPro{Ar}++ 20927 : AGTGTGCCTCTCTAGAGGAGTTAAAGGCTGCCAGCAAACCTAATATGGACCCA{CG}gt. : 20870 506 : >>> Target Intron 6 >>>> {g}GluLeuAlaMetLeuValSerMetAlaGlnS : 516 3118 bp {|}|||!!!:!!||||||:!!|||:!!||||||| ++{g}GluPheSerMetLeuLeuSerLeuAlaGlnS 20869 : ........................ag{T}GAGTTCTCAATGCTGCTCTCCTTGGCCCAGA : 17723 517 : erAsnProAlaLeuPheGlnMetIleSerAspArgGlyThrValSerArgGlnLeuGluA : 536 ||||||||||||||||| |||:!:||||||||| !!|||:!!:!!||||||||||||! erAsnProAlaLeuPheGlyMetLeuSerAspArgArgThrLeuAlaArgGlnLeuGluL 17722 : GTAACCCTGCGCTGTTCGGCATGTTGTCAGACCGGAGGACGTTGGCCCGACAGCTGGAGA : 17663 537 : rgLeuSerArgLeuLysGluLeuMetAspThrThrGluGluGlnLeuArgValLysHisT : 556 :!|||||||||||||||||||||:!!!!:!:!|||||| !.!.|||!:! !|||!!.| ysLeuSerArgLeuLysGluLeuLeuGluSerThrGluThrAspLeuLysAsnLysGlnT 17662 : AGCTCTCTAGGTTAAAGGAGCTGCTGGAAAGCACAGAGACGGACCTGAAGAACAAGCAGA : 17603 557 : hrGluHisTrpSerAspTrpIleGlnLysTyr{Ar} >>>> Target Intron 7 > : 567 |||||.!.|||!!! !||||||:!!:!!|||{||} 319 bp hrGluGluTrpThrCysTrpIleLysGlnTyr{Ar}++ 17602 : CGGAGGAATGGACCTGCTGGATTAAACAGTAC{AG}gt...................... : 17566 568 : >>> {g}GlnArgLeuAlaArgGluCysGluSerGlyValAspValLysAspValGlnT : 585 {|}||||||||||||||||||||||||.!!! ! !|||||||||! |||||| ++{g}GlnArgLeuAlaArgGluCysGluGlyGluCysAspValLysValValGlnG 17565 : ...ag{G}CAGCGTCTTGCTCGTGAGTGTGAGGGAGAGTGCGATGTGAAGGTGGTGCAGG : 17197 586 : hrGluArgValArgValMetAsnAsnAsnAsnProHisValValLeuArgAsnTyrIleA : 605 !||||||||||||||||||:!!!:!!.!||||||!.!|||||||||||||||||||||| luGluArgValArgValMetAspSerThrAsnProArgValValLeuArgAsnTyrIleA 17196 : AGGAGAGGGTGCGTGTGATGGACAGCACCAATCCTCGTGTAGTGCTTCGAAATTACATCG : 17137 606 : laGlnAsnAlaIleAlaAlaAlaGluAsnGlyAspPheSerGlu >>>> Target In : 620 ||||||||||||||! !||||||||||||||||||||||||||| 95 b laGlnAsnAlaIleGluAlaAlaGluAsnGlyAspPheSerGlu++ 17136 : CCCAGAATGCAATAGAAGCAGCAGAGAATGGGGACTTCTCTGAGgt.............. : 17090 621 : tron 8 >>>> ValGlnArgValLeuLysValLeuGluLysProPheSerValGlnGl : 635 p ||||||||||||||||||||||||||||||||||||!!!!.!||||| ++ValGlnArgValLeuLysValLeuGluLysProPheCysAlaGlnGl 17089 : ...........agGTTCAGAGAGTTCTGAAAGTGCTGGAGAAGCCGTTTTGCGCGCAGGA : 16952 636 : uGlyLeuGluGlnProGlyTrpMetGlyArgGlyGlyAlaAlaIleProGlyGluArgAs : 655 ||||! ! ! ! ! ||| !! !! !||| ! !! !|||...:: uGlyTrpMetValArg------ArgGlySerGluGluAlaGlnGluArgAspGluGluGl 16951 : GGGCTGGATGGTAAGA------CGAGGATCAGAGGAGGCACAAGAGAGGGATGAagaaga : 16898 656 : pGluThrGluGluGluGlySerAsnSerSerGlyAlaGlyAlaArgGlyLeuValProTy : 675 : ...||| ! !..!:!! !!!!||||||! ! !|||! !:!!||| !!|| uGlyGlnArgGluAlaGluGluAspValThrGlyAlaGluAsnArgValIleValSerTy 16897 : gggacagagagaggctGAGGAGGATGTTACAGGTGCAGAGAACAGAGTGATTGTGTCTTA : 16838 676 : rAspSerLysProProValTrpAlaAsnGluIleCysValThrUnkSerSer : 692 ||||||||||||||||!.!|||||| !:!!|||||||||||| |||||| rAspSerLysProProAlaTrpAlaAlaGlnIleCysValThr***SerSer 16837 : TGACAGCAAGCCCCCAGCCTGGGCTGCTCAAATCTGTGTCACATGATCATCC : 16785 vulgar: SPP00000640_2.0 0 692 . CM004417.1:subseq(9986433,75602) 25602 16784 - 2541 M 29 87 G 1 0 M 154 462 S 0 2 5 0 2 I 0 1291 3 0 2 S 1 1 M 67 201 S 0 2 5 0 2 I 0 157 3 0 2 S 1 1 M 59 177 5 0 2 I 0 1133 3 0 2 M 43 129 S 0 2 5 0 2 I 0 381 3 0 2 S 1 1 M 92 276 S 0 1 5 0 2 I 0 237 3 0 2 S 1 2 M 55 165 S 0 2 5 0 2 I 0 3114 3 0 2 S 1 1 M 61 183 S 0 2 5 0 2 I 0 315 3 0 2 S 1 1 M 52 156 5 0 2 I 0 91 3 0 2 M 21 63 G 2 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-16 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local gene 16785 25602 2541 - . gene_id 1 ; sequence SPP00000640_2.0 ; gene_orientation + CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local cds 25052 25602 . - . CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local exon 25052 25602 . - . insertions 0 ; deletions 1 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice5 25050 25051 . - . intron_id 1 ; splice_site "GT" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local intron 23757 25051 . - . intron_id 1 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice3 23757 23758 . - . intron_id 0 ; splice_site "ag" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local cds 23553 23756 . - . CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local exon 23553 23756 . - . insertions 0 ; deletions 0 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice5 23551 23552 . - . intron_id 2 ; splice_site "GT" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local intron 23392 23552 . - . intron_id 2 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice3 23392 23393 . - . intron_id 1 ; splice_site "AG" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local cds 23214 23391 . - . CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local exon 23214 23391 . - . insertions 0 ; deletions 0 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice5 23212 23213 . - . intron_id 3 ; splice_site "GT" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local intron 22077 23213 . - . intron_id 3 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice3 22077 22078 . - . intron_id 2 ; splice_site "ag" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local cds 21946 22076 . - . CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local exon 21946 22076 . - . insertions 0 ; deletions 0 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice5 21944 21945 . - . intron_id 4 ; splice_site "GT" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local intron 21561 21945 . - . intron_id 4 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice3 21561 21562 . - . intron_id 3 ; splice_site "AG" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local cds 21283 21560 . - . CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local exon 21283 21560 . - . insertions 0 ; deletions 0 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice5 21281 21282 . - . intron_id 5 ; splice_site "GT" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local intron 21042 21282 . - . intron_id 5 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice3 21042 21043 . - . intron_id 4 ; splice_site "AG" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local cds 20873 21041 . - . CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local exon 20873 21041 . - . insertions 0 ; deletions 0 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice5 20871 20872 . - . intron_id 6 ; splice_site "GT" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local intron 17755 20872 . - . intron_id 6 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice3 17755 17756 . - . intron_id 5 ; splice_site "AG" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local cds 17569 17754 . - . CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local exon 17569 17754 . - . insertions 0 ; deletions 0 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice5 17567 17568 . - . intron_id 7 ; splice_site "GT" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local intron 17250 17568 . - . intron_id 7 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice3 17250 17251 . - . intron_id 6 ; splice_site "AG" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local cds 17093 17249 . - . CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local exon 17093 17249 . - . insertions 0 ; deletions 0 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice5 17091 17092 . - . intron_id 8 ; splice_site "GT" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local intron 16998 17092 . - . intron_id 8 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local splice3 16998 16999 . - . intron_id 7 ; splice_site "AG" CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local cds 16785 16997 . - . CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local exon 16785 16997 . - . insertions 0 ; deletions 2 CM004417.1:subseq(9986433,75602) exonerate:protein2genome:local similarity 16785 25602 2541 - . alignment_id 1 ; Query SPP00000640_2.0 ; Align 25603 1 87 ; Align 25516 31 462 ; Align 23756 186 201 ; Align 23391 254 177 ; Align 22077 313 129 ; Align 21560 357 276 ; Align 21040 450 165 ; Align 17754 506 183 ; Align 17249 568 156 ; Align 16998 620 63 ; Align 16935 643 150 # --- END OF GFF DUMP --- # -- completed exonerate analysis