Command line: [exonerate -m p2g --showtargetgff -q sel529/sel529_x.fa -t sel529/SUBSEQ/CM004418.1_0_subseq.txt --exhaustive]
Hostname: [ws101070u]

C4 Alignment:
------------
         Query: SPP00000633_2.0  Protein  Selenoprotein K (SELENOK)  Zebrafish 
        Target: CM004418.1:subseq(11201312,25245) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 405
   Query range: 6 -> 94
  Target range: 25245 -> 24589

     7 : GlyGlnValLeuAspSerArgSerArgSerProTrpSerLeuSerPheLeuThrAspPhe :    26
         |||||||||||||||||||||!!!|||||||||||||||||||||||||||!:!|||.!!
         GlyGlnValLeuAspSerArgThrArgSerProTrpSerLeuSerPheLeuSerAspLeu
 25245 : GGTCAAGTCCTGGACAGTAGGACACGGTCGCCATGGAGTCTGTCTTTCCTTAGCGATCTC : 25188

    27 : PheTrpGlyAlaValGluPheIleGlyLeu{Ph}  >>>> Target Intron 1 >>> :    37
         |||||||||!.!|||||||||:!!||||||{||}            84 bp         
         PheTrpGlyValValGluPheValGlyLeu{Ph}++                        
 25187 : TTTTGGGGTGTAGTGGAGTTCGTTGGCCTC{TT}gt........................ : 25151

    38 : >  {e}PheGlnThrLeuValGlnProAspLeuSerLysAspGlyAsnAsnSerAlaSer :    55
            {|}||||||||||||:!!|||||||||:!!|||||||||||||||   |||:!!! !
          ++{e}PheGlnThrLeuIleGlnProAspValSerLysAspGlyAsnProSerSerMet
 25150 : .ag{C}TTTCAGACCCTCATCCAGCCAGATGTGTCAAAAGATGGAAATCCAAGTTCAATG : 25017

    56 : SerArgPheSerAspGlyArg{Gl}  >>>> Target Intron 2 >>>>  {y}Pro :    64
         |||||||||||||||||||||{||}            308 bp           {|}|||
         SerArgPheSerAspGlyArg{Gl}++                         ++{y}Pro
 25016 : TCACGCTTCAGTGATGGAAGA{GG}gt.........................ag{t}cCT : 24682

    65 : ProGlyPheProGlyArgArgArgMetGlyArgIleAsnHisGlyAlaGlyProThrPro :    84
         |||||||||||||||||||||||||||||||||||||||||||||!.!||||||!:!|||
         ProGlyPheProGlyArgArgArgMetGlyArgIleAsnHisGlyGlyGlyProSerPro
 24681 : CCAGGTTTTCCTGGGCGGAGACGTATGGGCAGGATAAACCATGGTGGAGGCCCAAGTCCT : 24622

    85 : ProProMetGlyGlyGlyGlyUnkGlyArg :    94
         |||||||||||||||||||||   ||||||
         ProProMetGlyGlyGlyGly***GlyArg
 24621 : CCTCCAATGGGTGGTGGTGGATGAGGAAGG : 24590

vulgar: SPP00000633_2.0 6 94 . CM004418.1:subseq(11201312,25245) 25245 24589 - 405 M 30 90 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 25 75 S 0 2 5 0 2 I 0 304 3 0 2 S 1 1 M 31 93
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	gene	24590	25245	405	-	.	gene_id 1 ; sequence SPP00000633_2.0 ; gene_orientation +
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	cds	25154	25245	.	-	.	
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	exon	25154	25245	.	-	.	insertions 0 ; deletions 0
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	splice5	25152	25153	.	-	.	intron_id 1 ; splice_site "GT"
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	intron	25070	25153	.	-	.	intron_id 1
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	splice3	25070	25071	.	-	.	intron_id 0 ; splice_site "AG"
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	cds	24992	25069	.	-	.	
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	exon	24992	25069	.	-	.	insertions 0 ; deletions 0
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	splice5	24990	24991	.	-	.	intron_id 2 ; splice_site "GT"
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	intron	24684	24991	.	-	.	intron_id 2
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	splice3	24684	24685	.	-	.	intron_id 1 ; splice_site "ag"
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	cds	24590	24683	.	-	.	
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	exon	24590	24683	.	-	.	insertions 0 ; deletions 0
CM004418.1:subseq(11201312,25245)	exonerate:protein2genome:local	similarity	24590	25245	405	-	.	alignment_id 1 ; Query SPP00000633_2.0 ; Align 25246 7 90 ; Align 25069 38 75 ; Align 24683 64 93
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis