Command line: [exonerate -m p2g --showtargetgff -q SELENOP539/SELENOP539_x.fa -t SELENOP539/SUBSEQ/CM004418.1_0_subseq.txt --exhaustive] Hostname: [ws112615u] C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 724 Query range: 0 -> 358 Target range: 25203 -> 23120 1 : MetTrpLysAlaLeuSerLeuThrLeuAlaLeuCysLeuLeuValGlyCysSerAlaGlu : 20 ||||||!:!:!!||||||||||||||| ! !..!|||:!!|||||||||! ...||| MetTrpArgSerLeuSerLeuThrLeuLeuAlaAlaLeuValValGlyCysArgGlyGlu 25203 : ATGTGGAGGTCTCTCAGCCTCACCCTGCTGGCTGCCCTGGTGGTGGGCTGTAggggtgag : 25146 21 : SerGluThrGluGlyAlaArgCysLysLeuProProGluTrpLysValGlyAspValGlu : 40 |||||||||:::|||||||||||||||! ! !! !!! !||||||:!!|||||||||||| SerGluThrAspGlyAlaArgCysLysProAlaAlaValTrpLysIleGlyAspValGlu 25145 : agtgagacagatggagCGAGATGTAAACCTGCGGCCGTGTGGAAGATCGGCGATGTGGAG : 25086 41 : ProMetLysAsnAlaLeuGlyGlnValThrValValAlaTyrLeuGlnAlaSerUnkLeu : 60 |||:!!|||:!!::!||||||!:!||||||||||||:!!!:!|||||||||||| ! ! ProLeuLysAspSerLeuGlyArgValThrValValSerPheLeuGlnAlaSer***Trp 25085 : CCGCTGAAGGACAGCCTGGGCCGAGTGACCGTGGTGTCCTTCCTCCAGGCCAGCTGATGG : 25026 61 : PheCysLeuGluGlnAlaSer{Ly} >>>> Target Intron 1 >>>> {s}Leu : 69 |||||||||..!||||||!!:{!:} 185 bp {!}||| PheCysLeuSerGlnAlaThr{Ar}++ ++{g}Leu 25025 : TTCTGCCTGTCGCAGGCGACc{ag}gt.........................ag{A}CTG : 24814 70 : AsnAspLeuLeuLeuLysLeuGluLysGlnGlyTyrProAsnIleAlaTyrMetValVal : 89 .!.!!:|||! !! !||||||||| ! !|||!:! !||||||.!!|||||||||||| GluGluLeuArgGlnLysLeuGluAspAlaGlyPheValAsnIleThrTyrMetValVal 24813 : GAGGAACTGCGGCAGAAGCTGGAGGATGCAGGCTTTGTAAACATCACGTACATGGTGGTG : 24754 90 : AsnAsnArgGluGluArgSerGlnArgLeuHisHisLeuLeuGlnGluArgLeuLeu<-> : 109 |||!:!!:!!!:|||!.!|||! |||:!!||| !||||||:!!:!!!:!|||! ! AsnSerGlnAspGluAsnSerLeuArgValHisSerLeuLeuLysLysLysLeuSerAsp 24753 : AACAGCCAGGATGAAAACTCACTCCGTGTTCACAGTCTGCTGAAGAAGAAACTCTCGGAT : 24694 110 : AsnIleThrLeuTyrAlaGlnAspLeuSerGlnProAspAlaTrpGlnAlaValAsnAla : 128 ||||||||||||||| !|||:!!! !..!:!!|||:!!!.!|||... !!.!!!.||| AsnIleThrLeuTyrLysGlnAsnProGluGluProAsnValTrpSerMetAlaLysAla 24693 : AACATCACTCTGTACAAGCAGAACCCTGAAGAGCCTAATGTGTGGAGCATGGCCAAGGCT : 24634 129 : GluLysAspAspIleLeuValTyrAsp{Ar} >>>> Target Intron 2 >>>> : 138 ||||||||||||.!!! !:!!||||||{||} 127 bp GluLysAspAspPheGlnIleTyrAsp{Ar}++ ++ 24633 : GAGAAGGACGACTTCCAGATCTATGAC{AG}gt.........................ag : 24477 139 : {g}CysGlyArgLeuThrTyrHisLeuSerLeuProTyrThrIleLeuIleHisProHis : 157 {|}|||||||||||||||:!!|||||||||:!!|||||||||||||||! !!!.|||||| {g}CysGlyArgLeuThrHisHisLeuSerMetProTyrThrIleLeuSerGlnProHis 24476 : {A}TGTGGACGTCTCACACATCACCTGTCTATGCCGTATACGATCCTGAGCCAGCCGCAT : 24420 158 : ValGluGluAlaIleLysHisThrTyrCysAspArgIleCysGlyGluCysSerLeuGlu : 177 |||||||||||||||!:!:!!.!!||||||! ! !:!:||||||||||||..!|||||| ValGluGluAlaIleArgAsnAlaTyrCysAlaAlaValCysGlyGluCysGluLeuGlu 24419 : GTGGAGGAGGCCATCAGAAACGCCTACTGCGCCGCCGTGTGTGGAGAGTGCGAGCTGGAG : 24360 178 : >>>> Target Intron 3 >>>> SerSerAlaGlnLeuGluGluCysLysLysA : 188 583 bp !!|||! !|||||||||||||||!!.|||. ++ ++ArgSerAspGlnLeuGluGluCysAsnLysT 24359 : gt.........................agCGCTCTGATCAACTGGAGGAATGCAACAAGA : 23744 189 : laThrGluGluValAsnLysProValGluGluGluProArgGlnAspHisGlyHisHisG : 208 !!! !|||||| !!..:!! !... ::: ...:::|||||| ||||||. hrLysGluGluLysThrGluGluThrProLysThrGluGluGluAspHis---HisHisH 23743 : CCAAGGAGGAGAAAACAGAGGAAAcaccaaaaacagaagaagaggatcac---catcatc : 23687 209 : luGlnGlyHisHisGluHisGlnGlyGluAlaGluArgHisArgHisGlyHisHisHisP : 228 ..||| ||||||...||| !.!.! !! !.!|||!.!...|||||||||||| isGlnHisHisHisHisHisGlyHisHisGluGlyHisHisHisArgGlyHisHisHisG 23686 : atcaacatcatcatcaccacggCCACCACGAAGGTCATCACCATAGAGGTCATCACCATG : 23627 229 : roHisHisHisHisHis{H} >>>> Target Intron 4 >>>> {is}HisArgG : 237 !||||||! !||| !!{ } 90 bp { !}!!. ! lyHisHisProHisAsp{G}++ -+{ly}GlnValG 23626 : GCCACCATCCCCATGAT{G}gt.........................gg{GC}CAGGTTC : 23510 238 : lyGlnGlnGlnValAspValAspGlnGlnValLeuSerGlnValAspPheGlyGlnValA : 257 !::!...|||||||||:!!! ||| !:!!.!!|||:!!|||!!.|||||||||! lnArgSerGlnValAspLeuGlyGlnAlaHisValGlyGlnIleAspLeuGlyGlnValG 23509 : AGAGGAGTCAGGTTGATTTGGGACAGGCCCATGTGGGGCAGATAGATTTGGGGCAGGTTG : 23450 258 : laValGluThr >>>> Target Intron 5 >>>> ProMetMetLysArgProUn : 267 .!:!!! ! ! 39 bp ! !:!:|||!:!|||||| lyIleGlyGln-+ ++GlnValMetArgArgPro** 23449 : GAATTGGACAGat.........................agCAGGTAATGAGGCGTCCCTG : 23381 268 : kAlaLysHisSerArgUnkLysValGlnTyrSerUnkGlnGlnGlyAlaAspSerProVa : 287 ||| |||||| ||| !!|||!:!! ! |||||||||||| !||| ! *Ala------SerArg***LysPheGlnPheMetCysGlnGlnGlyAlaLeuSerAspPr 23380 : AGCT------TCCAGGTGAAAATTCCAATTCATGTGTCAGCAGGGGGCGCTCTCCGACCC : 23327 288 : lAlaSerUnkCysUnkHisUnkArgGlnLeuPheGlyGlyGluGlyAsnGlyArgValAl : 307 !:!!||| ||| ||| |||!::|||.!!||| !.!. !|||! !||| oSerSer***Cys***His***ArgArgLeuIleGlyLeuHisLeuAsnGluArg----- 23326 : TTCCAGCTGATGCTGACACTGACGGCGTCTGATTGGCCTGCACCTTAATGAGAGG----- : 23270 308 : aGlyLeuUnkHisCysAspGluProLeuProAlaSerUnkProUnkGlnGlyLeuLysGl : 327 !||| !!.|||..!||||||||| !!|||||| ! ! |||||||||! !! -ProLeu***GlnCysSerGluProLeuAlaAlaSerCysLeu***GlnGlyLeuMetAl 23269 : -CCACTCTGACAGTGCAGTGAGCCGCTGGCTGCTTCCTGTCTCTGACAGGGGCTCATGGC : 23213 328 : uGlnAspAsnHisIleLysGluThrUnkGlnUnkArgProAlaProProAlaGluUnkGl : 347 !.!..!.|||:!!!!: |||||| ||| |||||||||! ! !!.!!!: :! aAspGlnAsnAsnMet---GluThr***Gln***ArgProAlaHisLeuGlyAsp***Gl 23212 : GGACCAAAACAACATG---GAAACTTGACAGTGACGCCCCGCCCACTTGGGTGACTGACA : 23156 348 : uLeuSerGlnProThrUnkValUnkProAlaGly : 358 !! !:!!||||||! ! !.! ||||||||| nProAlaGlnProIle***Ala***ProAlaGly 23155 : GCCAGCTCAGCCAATCTGAGCCTGACCTGCAGGG : 23121 vulgar: SPP00000643_2.0 0 358 . CM004418.1:subseq(176850,25203) 25203 23120 - 724 M 67 201 S 0 2 5 0 2 I 0 181 3 0 2 S 1 1 M 40 120 G 0 3 M 29 87 S 0 2 5 0 2 I 0 123 3 0 2 S 1 1 M 39 117 5 0 2 I 0 579 3 0 2 M 27 81 G 1 0 M 28 84 S 0 1 5 0 2 I 0 86 3 0 2 S 1 2 M 26 78 5 0 2 I 0 35 3 0 2 M 8 24 G 2 0 M 35 105 G 2 0 M 25 75 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 23121 25203 724 - . gene_id 1 ; sequence SPP00000643_2.0 ; gene_orientation + CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 25001 25203 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 25001 25203 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 24999 25000 . - . intron_id 1 ; splice_site "gt" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 24816 25000 . - . intron_id 1 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 24816 24817 . - . intron_id 0 ; splice_site "AG" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 24603 24815 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 24603 24815 . - . insertions 3 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 24601 24602 . - . intron_id 2 ; splice_site "GT" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 24476 24602 . - . intron_id 2 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 24476 24477 . - . intron_id 1 ; splice_site "AG" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 24358 24475 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 24358 24475 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 24356 24357 . - . intron_id 3 ; splice_site "GT" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 23775 24357 . - . intron_id 3 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 23775 23776 . - . intron_id 2 ; splice_site "AG" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 23609 23774 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 23609 23774 . - . insertions 0 ; deletions 1 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 23607 23608 . - . intron_id 4 ; splice_site "GT" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 23519 23608 . - . intron_id 4 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 23519 23520 . - . intron_id 3 ; splice_site "GG" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 23439 23518 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 23439 23518 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 23437 23438 . - . intron_id 5 ; splice_site "AT" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 23400 23438 . - . intron_id 5 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 23400 23401 . - . intron_id 4 ; splice_site "AG" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 23121 23399 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 23121 23399 . - . insertions 0 ; deletions 5 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 23121 25203 724 - . alignment_id 1 ; Query SPP00000643_2.0 ; Align 25204 1 201 ; Align 24815 69 120 ; Align 24692 109 87 ; Align 24475 139 117 ; Align 23775 178 81 ; Align 23694 206 84 ; Align 23517 235 78 ; Align 23400 261 24 ; Align 23376 271 105 ; Align 23271 308 75 ; Align 23196 334 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 138 -> 235 Target range: 24378 -> 17681 139 : CysGlyArgLeuThrTyrHisLeuSerLeuProTyrThrIleLeuIleHisProHisVal : 158 ||||||..!! ! ! .!.:!!!:: |||||| ||||||:!! !!||| !! CysGlyGluCysGluLeuGluValAsnHisHisTyrThrThrLeuIleTyrSerHisPhe 24378 : TGTGGAGAGTGCGAGCTGGAGGTAAAccatcactacactacactcatCTACTCGCACTTC : 24321 159 : GluGluAlaIleLysHisThr >>>> Target Intron 1 >>>> TyrCysAspA : 169 !:!!|||:!!!!.!..! ! 523 bp !! !|||! IleLysAlaValAsnArgIle++ ++ArgSerAspG 24320 : ATAAAGGCCGTAAATCGGATTgt.........................agCGCTCTGATC : 23765 170 : rgIleCysGlyGluCysSerLeuGluSerSerAlaGlnLeuGluGluCysLysLysAlaT : 189 :!:!: ! !||||||!:! ! !.!..!! !:!! !|||||| |||... lnLeu---GluGluCysAsnLysThrLysGluGluLysThrGluGluThrProLysThrG 23764 : AACTG---GAGGAATGCAACAAGACCAAGGAGGAGAAAACAGAGGAAAcaccaaaaacag : 23708 190 : hrGluGluValAsnLysProValGluGluGluProArgGlnAspHisGly >>>> Tar : 206 |||||| ::: :::...... ...... !||| ! luGluGluAspHisHisHisHisGlnHisHisHisHisHisGlyHisHis+- 23707 : aagaagaggatcaccatcatcatcaacatcatcatcaccacggCCACCACga........ : 23655 207 : get Intron 2 >>>> HisHisGluGlnGlyHisHisGluHisGlnGlyGluAlaGl : 219 5886 bp |||||| ! !!. !|||:!!.!.|||!!. !.!. !.! +-HisHisTyrHisHisHisTyrHisHisHisTyrHisHisHi 23654 : .................acCATCACTACCACCATCACTACCACCATCACTACCACCATCA : 17732 220 : uArgHisArgHisGlyHisHisHisProHisHisHisHisHisHisHis : 235 . !|||!.!||| !||||||||| !|||||||||:!!||||||||| sTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHis 17731 : CTACCACCATCATTACCACCATCACTACCACCATCATTACCACCATCAC : 17682 vulgar: SPP00000643_2.0 138 235 . CM004418.1:subseq(176850,25203) 24378 17681 - 117 M 27 81 5 0 2 I 0 519 3 0 2 M 5 15 G 1 0 M 34 102 5 0 2 I 0 5882 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17682 24378 117 - . gene_id 2 ; sequence SPP00000643_2.0 ; gene_orientation + CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 24298 24378 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 24298 24378 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 24296 24297 . - . intron_id 1 ; splice_site "GT" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 23775 24297 . - . intron_id 1 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 23775 23776 . - . intron_id 0 ; splice_site "AG" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 23658 23774 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 23658 23774 . - . insertions 0 ; deletions 1 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 23656 23657 . - . intron_id 2 ; splice_site "GA" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 17772 23657 . - . intron_id 2 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 17772 17773 . - . intron_id 1 ; splice_site "AC" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17682 17771 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17682 17771 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17682 24378 117 - . alignment_id 2 ; Query SPP00000643_2.0 ; Align 24379 139 81 ; Align 23775 166 15 ; Align 23760 172 102 ; Align 17772 206 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 185 -> 235 Target range: 23738 -> 17705 186 : LysLysAlaThrGluGluValAsnLysProValGluGluGluProArgGlnAspHisGly : 205 :!!:!! !|||||||||... ||| ||||||::: ...... ... GluGluLysThrGluGluThrProLysThrGluGluGluAspHisHisHisHisGlnHis 23738 : GAGGAGAAAACAGAGGAAAcaccaaaaacagaagaagaggatcaccatcatcatcaacat : 23681 206 : HisHisGluGlnGlyHisHis >>>> Target Intron 1 >>>> GluHisGlnG : 216 ||||||......||||||||| 5883 bp .!.|||!!. HisHisHisHisGlyHisHis+- +-HisHisHisT 23680 : catcatcaccacggCCACCACga.........................aaCACCATCACT : 17765 217 : lyGluAlaGluArgHisArgHisGlyHisHisHisProHisHisHisHisHisHisHis : 235 !.!. !.!. !|||!.!||| !||||||||| !|||||||||:!!||||||||| yrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHis 17764 : ACCACCATCACTACCACCATCACTACCACCATCACTACCACCATCATTACCACCATCAC : 17706 vulgar: SPP00000643_2.0 185 235 . CM004418.1:subseq(176850,25203) 23738 17705 - 110 M 27 81 5 0 2 I 0 5879 3 0 2 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17706 23738 110 - . gene_id 3 ; sequence SPP00000643_2.0 ; gene_orientation + CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 23658 23738 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 23658 23738 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 23656 23657 . - . intron_id 1 ; splice_site "GA" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 17775 23657 . - . intron_id 1 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 17775 17776 . - . intron_id 0 ; splice_site "AA" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17706 17774 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17706 17774 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17706 23738 110 - . alignment_id 3 ; Query SPP00000643_2.0 ; Align 23739 186 81 ; Align 17775 213 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 189 -> 235 Target range: 23759 -> 23618 190 : GluGluValAsnLysProValGluGluGluProArgGlnAspHisGlyHisHisGluGln : 209 |||||| !|||||| !! !||||||:!! !!..!:!! ...|||::: GluGluCysAsnLysThrLysGluGluLysThrGluGluThrProLysThrGluGluGlu 23759 : GAGGAATGCAACAAGACCAAGGAGGAGAAAACAGAGGAAAcaccaaaaacagaagaagag : 23702 210 : GlyHisHisGluHisGlnGlyGluAlaGluArg<->HisArgHisGlyHisHisHisPro : 228 ||||||...|||||| ... ...... |||!.!.!.|||||||||||| ! AspHisHisHisHisGlnHisHisHisHisHisGlyHisHisGluGlyHisHisHisArg 23701 : gatcaccatcatcatcaacatcatcatcaccacggCCACCACGAAGGTCATCACCATAGA : 23642 229 : HisHisHisHisHisHisHis : 235 !||||||||| !|||||| GlyHisHisHisGlyHisHis 23641 : GGTCATCACCATGGCCACCAT : 23619 vulgar: SPP00000643_2.0 189 235 . CM004418.1:subseq(176850,25203) 23759 23618 - 107 M 31 93 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 23619 23759 107 - . gene_id 4 ; sequence SPP00000643_2.0 ; gene_orientation . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 23619 23759 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 23619 23759 . - . insertions 3 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 23619 23759 107 - . alignment_id 4 ; Query SPP00000643_2.0 ; Align 23760 190 93 ; Align 23664 221 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 203 -> 235 Target range: 17765 -> 17669 204 : HisGlyHisHisGluGlnGlyHisHisGluHisGlnGlyGluAlaGluArgHisArgHis : 223 :!! !|||||| ! !!. !|||:!!.!.|||!!. !.!. !.!. !|||!.!||| TyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHis 17765 : TACCACCATCACTACCACCATCACTACCACCATCACTACCACCATCATTACCACCATCAC : 17708 224 : GlyHisHisHisProHisHisHisHisHisHisHis : 235 !||||||||| !|||||||||:!!||||||||| TyrHisHisHisTyrHisHisHisTyrHisHisHis 17707 : TACCACCATCATTACCACCATCACTACCACCATCAC : 17670 vulgar: SPP00000643_2.0 203 235 . CM004418.1:subseq(176850,25203) 17765 17669 - 107 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17670 17765 107 - . gene_id 5 ; sequence SPP00000643_2.0 ; gene_orientation . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17670 17765 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17670 17765 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17670 17765 107 - . alignment_id 5 ; Query SPP00000643_2.0 ; Align 17766 204 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 203 -> 235 Target range: 17753 -> 17657 204 : HisGlyHisHisGluGlnGlyHisHisGluHisGlnGlyGluAlaGluArgHisArgHis : 223 :!! !|||||| ! !!. !|||:!!.!.|||!!. !.!. !.!. !|||!.!||| TyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHis 17753 : TACCACCATCACTACCACCATCACTACCACCATCATTACCACCATCACTACCACCATCAT : 17696 224 : GlyHisHisHisProHisHisHisHisHisHisHis : 235 !||||||||| !|||||||||:!!||||||||| TyrHisHisHisTyrHisHisHisTyrHisHisHis 17695 : TACCACCATCACTACCACCATCACTACCACCATCAT : 17658 vulgar: SPP00000643_2.0 203 235 . CM004418.1:subseq(176850,25203) 17753 17657 - 107 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17658 17753 107 - . gene_id 6 ; sequence SPP00000643_2.0 ; gene_orientation . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17658 17753 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17658 17753 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17658 17753 107 - . alignment_id 6 ; Query SPP00000643_2.0 ; Align 17754 204 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 203 -> 235 Target range: 17729 -> 17633 204 : HisGlyHisHisGluGlnGlyHisHisGluHisGlnGlyGluAlaGluArgHisArgHis : 223 :!! !|||||| ! !!. !|||:!!.!.|||!!. !.!. !.!. !|||!.!||| TyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHis 17729 : TACCACCATCATTACCACCATCACTACCACCATCATTACCACCATCACTACCACCATCAC : 17672 224 : GlyHisHisHisProHisHisHisHisHisHisHis : 235 !||||||||| !||||||||| ||||||||| TyrHisHisHis***HisHisHisSerHisHisHis 17671 : TACCACCATCATTAACACCATCACTCACaccatcat : 17634 vulgar: SPP00000643_2.0 203 235 . CM004418.1:subseq(176850,25203) 17729 17633 - 103 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17634 17729 103 - . gene_id 7 ; sequence SPP00000643_2.0 ; gene_orientation . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17634 17729 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17634 17729 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17634 17729 103 - . alignment_id 7 ; Query SPP00000643_2.0 ; Align 17730 204 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 203 -> 235 Target range: 17768 -> 17672 204 : HisGlyHisHisGluGlnGlyHisHisGluHisGlnGlyGluAlaGluArgHisArgHis : 223 ||| !||||||.!. ! !|||||| ! |||!!. ! ! !.!.!.!:!!!.!||| HisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHis 17768 : CACTACCACCATCACTACCACCATCACTACCACCATCACTACCACCATCATTACCACCAT : 17711 224 : GlyHisHisHisProHisHisHisHisHisHisHis : 235 !:!!||||||! !:!!|||||||||:!!|||||| HisTyrHisHisHisTyrHisHisHisTyrHisHis 17710 : CACTACCACCATCATTACCACCATCACTACCACCAT : 17673 vulgar: SPP00000643_2.0 203 235 . CM004418.1:subseq(176850,25203) 17768 17672 - 102 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17673 17768 102 - . gene_id 8 ; sequence SPP00000643_2.0 ; gene_orientation . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17673 17768 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17673 17768 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17673 17768 102 - . alignment_id 8 ; Query SPP00000643_2.0 ; Align 17769 204 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 203 -> 235 Target range: 17756 -> 17660 204 : HisGlyHisHisGluGlnGlyHisHisGluHisGlnGlyGluAlaGluArgHisArgHis : 223 ||| !||||||.!. ! !|||||| ! |||!!. ! ! !.!.!.!:!!!.!||| HisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHis 17756 : CACTACCACCATCACTACCACCATCACTACCACCATCATTACCACCATCACTACCACCAT : 17699 224 : GlyHisHisHisProHisHisHisHisHisHisHis : 235 !:!!||||||! !:!!|||||||||:!!|||||| HisTyrHisHisHisTyrHisHisHisTyrHisHis 17698 : CATTACCACCATCACTACCACCATCACTACCACCAT : 17661 vulgar: SPP00000643_2.0 203 235 . CM004418.1:subseq(176850,25203) 17756 17660 - 102 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17661 17756 102 - . gene_id 9 ; sequence SPP00000643_2.0 ; gene_orientation . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17661 17756 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17661 17756 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17661 17756 102 - . alignment_id 9 ; Query SPP00000643_2.0 ; Align 17757 204 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 174 -> 307 Target range: 23792 -> 10065 175 : SerLeuGluSerSerAlaGlnLeuGluGluCysLysLysAlaThrGluGluValAsnLys : 194 |||:!! ..!||| !!::! !!!::!! :!!:!!..!!.!:!! !.!.:!! SerValPheAspSerGlnArgSerAspGlnLeuGluGluCysAsnLysThrLysGluGlu 23792 : AGTGTTTTTGATTCGCAGCGCTCTGATCAACTGGAGGAATGCAACAAGACCAAGGAGGAG : 23735 195 : ProValGluGluGluProArg<->GlnAspHisGlyHisHisGluGlnGlyHisHisGlu : 213 !..!|||||| |||::: ::::::... ||||||...... ||||||... LysThrGluGluThrProLysThrGluGluGluAspHisHisHisHisGlnHisHisHis 23734 : AAAACAGAGGAAAcaccaaaaacagaagaagaggatcaccatcatcatcaacatcatcat : 23675 214 : HisGlnGlyGluAlaGluArgHisArgHisGlyHisHisHisProHisHisHisHisHis : 233 |||...|||.!. !||| !!|||!.!||| !! !||||||! ! !||||||! !||| HisHisGlyHisHisGluGlyHisHisHisArgGlyHisHisHisGlyHisHisProHis 23674 : caccacggCCACCACGAAGGTCATCACCATAGAGGTCATCACCATGGCCACCATCCCCAT : 23615 234 : HisHis >>>> Target Intron 1 >>>> ArgGlyGlnGlnGlnValAspValA : 244 !! ! 123 bp ! ! ! !|||:!!|||:!!! AspGly++ ++AlaHisValGlyGlnIleAspLeuG 23614 : GATGGTgt.........................agGCCCATGTGGGGCAGATAGATTTGG : 23459 245 : spGlnGlnValLeuSerGlnValAspPheGlyGlnValAlaValGluThrProMetMetL : 264 ||| ! !:!!.!!|||:!!|||.!! !!!.||||||! !!!:..! !! ..!: lyGlnValGlyIleGlyGlnIleAspLeuGlnHisValAlaAspAspValGlyAsnGlnG 23458 : GGCAGGTTGGAATTGGACAGATAGACCTCCAACATGTAGCTGATGATGTAGGAAACCAGC : 23399 265 : ys >>>> Target Intron 2 >>>> ArgProUnkAlaLysHisSerArgUnkLy : 274 !! 7492 bp ||| !! !! !||| !||| :: ln++ ++ArgThrArgGlnThrHisValArgLysAr 23398 : AGgt.........................agAGAACGCGTCAAACACACGTGAGAAAACG : 15877 275 : sValGlnTyrSerUnkGlnGlnGly >>>> Target Intron 3 >>>> >>>> : 283 :|||.!. ||| ...... ! 5072 bp gValAsnThrSerLysSerSerThr++ ++++ 15876 : TGTGAATACGAGTAAAAGCAGCACTgt.........................aggt.... : 10776 284 : Target Intron 4 >>>> AlaAspSerProValAlaSerUnkCysUnkHisUnkA : 295 638 bp |||!!:..! !|||..!! !...||| !... +-AlaGluGln***ValCysIleAlaCysValThrSerA 10775 : .....................aaGCAGAACAGTGAGTGTGTATTGCGTGTGTTACCTCTG : 10104 296 : rgGlnLeuPheGlyGlyGluGlyAsnGlyArgValAla : 307 ! :!! ||||||...|||...|||||| !||| laAlaValArgGlyGlyArgGlyArgGlyArgSerAla 10103 : CTGCTGTGagaggaggacgaggacgaggaaGATCAGCA : 10066 vulgar: SPP00000643_2.0 174 307 . CM004418.1:subseq(176850,25203) 23792 10065 - 102 M 27 81 G 0 3 M 34 102 5 0 2 I 0 119 3 0 2 M 29 87 5 0 2 I 0 7488 3 0 2 M 18 54 5 0 2 I 0 5068 3 0 2 5 0 2 I 0 634 3 0 2 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 10066 23792 102 - . gene_id 10 ; sequence SPP00000643_2.0 ; gene_orientation + CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 23607 23792 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 23607 23792 . - . insertions 3 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 23605 23606 . - . intron_id 1 ; splice_site "GT" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 23484 23606 . - . intron_id 1 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 23484 23485 . - . intron_id 0 ; splice_site "AG" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 23397 23483 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 23397 23483 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 23395 23396 . - . intron_id 2 ; splice_site "GT" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 15905 23396 . - . intron_id 2 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 15905 15906 . - . intron_id 1 ; splice_site "AG" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 15851 15904 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 15851 15904 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 15849 15850 . - . intron_id 3 ; splice_site "GT" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 10779 15850 . - . intron_id 3 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 10779 10780 . - . intron_id 2 ; splice_site "ag" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice5 10777 10778 . - . intron_id 4 ; splice_site "gt" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local intron 10141 10778 . - . intron_id 4 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local splice3 10141 10142 . - . intron_id 3 ; splice_site "AA" CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 10066 10140 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 10066 10140 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 10066 23792 102 - . alignment_id 10 ; Query SPP00000643_2.0 ; Align 23793 175 81 ; Align 23709 202 102 ; Align 23484 236 87 ; Align 15905 265 54 ; Align 10141 283 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 203 -> 235 Target range: 17780 -> 17684 204 : HisGlyHisHisGluGlnGlyHisHisGluHisGlnGlyGluAlaGluArgHisArgHis : 223 ||| !||||||.!. ! !|||||| ! |||!!. ! ! !.!.!.!:!!!.!||| His***HisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHis 17780 : CATTAACACCATCACTACCACCATCACTACCACCATCACTACCACCATCACTACCACCAT : 17723 224 : GlyHisHisHisProHisHisHisHisHisHisHis : 235 !:!!||||||! !:!!|||||||||:!!|||||| HisTyrHisHisHisTyrHisHisHisTyrHisHis 17722 : CATTACCACCATCACTACCACCATCATTACCACCAT : 17685 vulgar: SPP00000643_2.0 203 235 . CM004418.1:subseq(176850,25203) 17780 17684 - 101 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17685 17780 101 - . gene_id 11 ; sequence SPP00000643_2.0 ; gene_orientation . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17685 17780 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17685 17780 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17685 17780 101 - . alignment_id 11 ; Query SPP00000643_2.0 ; Align 17781 204 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 203 -> 235 Target range: 17741 -> 17645 204 : HisGlyHisHisGluGlnGlyHisHisGluHisGlnGlyGluAlaGluArgHisArgHis : 223 :!! !|||||| ! !!. !|||:!!.!.|||!!. !.!. !.!. !|||!.!||| TyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHis 17741 : TACCACCATCACTACCACCATCATTACCACCATCACTACCACCATCATTACCACCATCAC : 17684 224 : GlyHisHisHisProHisHisHisHisHisHisHis : 235 !||||||||| !||||||||| ! ||||||||| TyrHisHisHisTyrHisHisHis***HisHisHis 17683 : TACCACCATCACTACCACCATCATTAACACCATCAC : 17646 vulgar: SPP00000643_2.0 203 235 . CM004418.1:subseq(176850,25203) 17741 17645 - 101 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17646 17741 101 - . gene_id 12 ; sequence SPP00000643_2.0 ; gene_orientation . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17646 17741 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17646 17741 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17646 17741 101 - . alignment_id 12 ; Query SPP00000643_2.0 ; Align 17742 204 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000643_2.0 Protein Selenoprotein P (SELENOP) Zebrafish Target: CM004418.1:subseq(176850,25203) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 195 -> 235 Target range: 17813 -> 17693 196 : ValGluGluGluProArgGlnAspHisGlyHisHisGluGlnGlyHisHisGluHisGln : 215 :!!..!..!.!.|||! !..!... ! !||| !!!!. !|||:!!.!.|||!!. IleArgSerAsnProThrSerSerSerPheThrHis***HisHisHisTyrHisHisHis 17813 : ATACGATCGAATCCAACGTCATCATCATTCACTCATTAACACCATCACTACCACCATCAC : 17756 216 : GlyGluAlaGluArgHisArgHisGlyHisHisHisProHisHisHisHisHisHisHis : 235 !.!. !.!. !|||!.!||| !||||||||| !|||||||||:!!||||||||| TyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHisTyrHisHisHis 17755 : TACCACCATCACTACCACCATCACTACCACCATCATTACCACCATCACTACCACCATCAT : 17696 vulgar: SPP00000643_2.0 195 235 . CM004418.1:subseq(176850,25203) 17813 17693 - 100 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # CM004418.1:subseq(176850,25203) exonerate:protein2genome:local gene 17694 17813 100 - . gene_id 13 ; sequence SPP00000643_2.0 ; gene_orientation . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local cds 17694 17813 . - . CM004418.1:subseq(176850,25203) exonerate:protein2genome:local exon 17694 17813 . - . insertions 0 ; deletions 0 CM004418.1:subseq(176850,25203) exonerate:protein2genome:local similarity 17694 17813 100 - . alignment_id 13 ; Query SPP00000643_2.0 ; Align 17814 196 120 # --- END OF GFF DUMP --- # -- completed exonerate analysis