Command line: [exonerate -m p2g --showtargetgff -q SELENOE.fa -t genomic.fa]
Hostname: [ws101074u]

C4 Alignment:
------------
         Query: SPP00000615_2.0 # Protein # Fish selenoprotein 15 (SELENOE) # Zebrafish 
        Target: CM004435.1:subseq(3590000,150000) Ictalurus punctatus breed USDA103 chromosome 22, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 528
   Query range: 0 -> 138
  Target range: 2793 -> 4767

    1 : MetTrpLeuThrLeuValAlaLeuLeuAlaLeuCysAlaThrGlyArgThrAlaGluAsnLe :   21
        |||||||||:!!:!!:!!!.!||||||||||||||||||||||||:::|||   ||||||  
        MetTrpLeuSerMetMetValLeuLeuAlaLeuCysAlaThrGlyLysThrGluGluAsnTh
 2794 : ATGTGGCTCTCAATGATGGTCCTCTTGGCGCTCTGTGCCACGGgaaaaacagaggaaaacaC : 2854

   22 : uSerGluSerThrThrAspGlnAspLysLeuValIleAlaArgGlyLysLeuVal  >>>>  :   40
        !!!!:!!||| !!.!!!  :!!!!:||||||:!!||||||||||||||||||:!!       
        rThrGlnSerProAlaGlyGluGluLysLeuIleIleAlaArgGlyLysLeuIle++     
 2855 : CACGCAGAGTCCAGCCGGAGAAGAAAAACTCATCATTGCCAGAGGAAAACTGATTgt..... : 2913

   41 : Target Intron 1 >>>>  AlaProSerValValGlyUnkSerIleLysLysMetProG :   53
            1011 bp           ||||||||||||||||||   |||||||||||||||||||
                            ++AlaProSerValValGly***SerIleLysLysMetProG
 2914 : ....................agGCTCCCAGTGTGGTGGGATGATCCATAAAGAAGATGCCTG : 3961

   54 : luLeuTyrAsnPheLeuMetGluArgTrpAlaLeu{Ty}  >>>> Target Intron 2  :   65
        ||||||||!!.|||||||||||||||! !||||||{||}            229 bp     
        luLeuTyrLysPheLeuMetGluArgLeuAlaLeu{Ty}++                     
 3962 : AGCTCTACAAGTTCCTCATGGAGCGCTTGGCACTG{TA}gt..................... : 4001

   66 : >>>>  {r}HisAsnLeuGluTyrAspSerGlyGluAspLysAsnProArgLeuIlePheTy :   83
              {|}||||||||||||||||||||||||!!:||||||||||||||||||||||||||
            ++{r}HisAsnLeuGluTyrAspSerGlyAspAspLysAsnProArgLeuIlePheTy
 4002 : ....ag{T}CATAACCTGGAGTATGATTCCGGAGACGACAAAAACCCACGTCTTATCTTTTA : 4280

   84 : rAsnAspLysAspGluGluValLys  >>>> Target Intron 3 >>>>  ValValPr :   94
        ||||!!:||||||||||||||||||            320 bp           :!!|||||
        rAsnGluLysAspGluGluValLys++                         ++IleValPr
 4281 : CAACGAGAAGGATGAGGAGGTGAAGgt.........................agATTGTTCC : 4633

   95 : oValLysLysMetLysAlaAspGluIleSerSerLeuLeuAspSerLeuGlyPheTyrLysA :  115
        |:!!||||||||||||:!!|||||||||!!!..!||||||||||||||||||||||||||||
        oLeuLysLysMetLysSerAspGluIleCysAspLeuLeuAspSerLeuGlyPheTyrLysA
 4634 : ACTCAAGAAGATGAAGTCAGATGAAATCTGTGATCTTCTGGACTCTCTTGGCTTCTACAAGA : 4696

  116 : rgSerGluLysGlyGluGluValProGluGluPheLysHisPheProLeuArgAlaProArg :  135
        |||||:!!|||||||||!!:|||||||||||||||! !:!!|||||||||!:!|||||||||
        rgSerGlnLysGlyGluAspValProGluGluPheMetAsnPheProLeuLysAlaProArg
 4697 : GGTCACAAAAAGGAGAGGATGTCCCTGAAGAATTTATGAATTTCCCCCTGAAGGCTCCACGA : 4756

  136 : AspGluLeu :  138
        |||||||||
        AspGluLeu
 4757 : GACGAACTT : 4767

vulgar: SPP00000615_2.0 0 138 . CM004435.1:subseq(3590000,150000) 2793 4767 + 528 M 39 117 5 0 2 I 0 1007 3 0 2 M 25 75 S 0 2 5 0 2 I 0 225 3 0 2 S 1 1 M 26 78 5 0 2 I 0 316 3 0 2 M 47 141
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	gene	2794	4767	528	+	.	gene_id 1 ; sequence SPP00000615_2.0 ; gene_orientation +
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	cds	2794	2910	.	+	.	
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	exon	2794	2910	.	+	.	insertions 0 ; deletions 0
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	splice5	2911	2912	.	+	.	intron_id 1 ; splice_site "GT"
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	intron	2911	3921	.	+	.	intron_id 1
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	splice3	3920	3921	.	+	.	intron_id 0 ; splice_site "AG"
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	cds	3922	3998	.	+	.	
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	exon	3922	3998	.	+	.	insertions 0 ; deletions 0
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	splice5	3999	4000	.	+	.	intron_id 2 ; splice_site "GT"
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	intron	3999	4227	.	+	.	intron_id 2
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	splice3	4226	4227	.	+	.	intron_id 1 ; splice_site "AG"
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	cds	4228	4306	.	+	.	
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	exon	4228	4306	.	+	.	insertions 0 ; deletions 0
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	splice5	4307	4308	.	+	.	intron_id 3 ; splice_site "GT"
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	intron	4307	4626	.	+	.	intron_id 3
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	splice3	4625	4626	.	+	.	intron_id 2 ; splice_site "AG"
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	cds	4627	4767	.	+	.	
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	exon	4627	4767	.	+	.	insertions 0 ; deletions 0
CM004435.1:subseq(3590000,150000)	exonerate:protein2genome:local	similarity	2794	4767	528	+	.	alignment_id 1 ; Query SPP00000615_2.0 ; Align 2794 1 117 ; Align 3922 40 75 ; Align 4229 66 78 ; Align 4627 92 141
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis