Command line: [exonerate -m p2g --showtargetgff -q MSRB1b/MSRB1b_x.fa -t MSRB1b/SUBSEQ/CM004426.1_0_subseq.txt --exhaustive]
Hostname: [ws116049u]

C4 Alignment:
------------
         Query: SPP00000644_2.0  Protein  Methionine-R-sufoxide reductase 1b (MSRB1b)  Zebrafish 
        Target: CM004426.1:subseq(16817608,25146) Ictalurus punctatus breed USDA103 chromosome 13, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 403
   Query range: 18 -> 104
  Target range: 25146 -> 24401

    19 : GlyIleTyrAlaCysSerGlnCysGlyHisProLeuPheSerSerArgSerLysTyrGlu :    38
         ||||||||||||||||||||||||!.!:!!|||||||||||||||||||||||||||!  
         GlyIleTyrAlaCysSerGlnCysAlaAsnProLeuPheSerSerArgSerLysTyrAla
 25146 : GGAATATATGCTTGCTCCCAATGTGCAAACCCACTATTTTCCAGTAGATCCAAATATGCC : 25089

    39 : HisSerSerProTrpProAlaPheThrGluThrIleArgGluAspSerValThrLysMet :    58
         ||||||||||||||||||||||||||||||||||||!.!||||||||||||||||||:!!
         HisSerSerProTrpProAlaPheThrGluThrIleHisGluAspSerValThrLysVal
 25088 : CACTCCTCGCCTTGGCCAGCCTTCACAGAAACTATCCATGAAGACAGTGTGACTAAAGTG : 25029

    59 : MetGluThrLeuThrAlaTyrLys  >>>> Target Intron 1 >>>>  ValLeuC :    69
         ||||||||||||||||||||||||            487 bp           |||:!!|
         MetGluThrLeuThrAlaTyrLys++                         ++ValMetC
 25028 : ATGGAGACACTCACGGCTTATAAGgt.........................agGTCATGT : 24509

    70 : ysGlyLysCysGlyAsnGlyLeuGlyHisGluPheLeuAsnAspGlyProGluGluGlyL :    89
         ||||||||||||||||||||||||||||||||||||||!:!||||||||||||||||||:
         ysGlyLysCysGlyAsnGlyLeuGlyHisGluPheLeuSerAspGlyProGluGluGlyM
 24508 : GTGGCAAGTGTGGCAACGGACTAGGCCATGAGTTTCTGAGTGACGGTCCAGAGGAAGGCA : 24449

    90 : euSerArgPheUnkIlePheSerHisSerLeuLysPheValProLys :   104
         !! !!||||||   |||||||||||||||||||||||||||||||||
         etProArgPhe***IlePheSerHisSerLeuLysPheValProLys
 24448 : TGCCAAGATTTTGAATTTTTAGCCACTCGCTGAAGTTTGTCCCAAAA : 24402

vulgar: SPP00000644_2.0 18 104 . CM004426.1:subseq(16817608,25146) 25146 24401 - 403 M 48 144 5 0 2 I 0 483 3 0 2 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004426.1:subseq(16817608,25146)	exonerate:protein2genome:local	gene	24402	25146	403	-	.	gene_id 1 ; sequence SPP00000644_2.0 ; gene_orientation +
CM004426.1:subseq(16817608,25146)	exonerate:protein2genome:local	cds	25003	25146	.	-	.	
CM004426.1:subseq(16817608,25146)	exonerate:protein2genome:local	exon	25003	25146	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(16817608,25146)	exonerate:protein2genome:local	splice5	25001	25002	.	-	.	intron_id 1 ; splice_site "GT"
CM004426.1:subseq(16817608,25146)	exonerate:protein2genome:local	intron	24516	25002	.	-	.	intron_id 1
CM004426.1:subseq(16817608,25146)	exonerate:protein2genome:local	splice3	24516	24517	.	-	.	intron_id 0 ; splice_site "AG"
CM004426.1:subseq(16817608,25146)	exonerate:protein2genome:local	cds	24402	24515	.	-	.	
CM004426.1:subseq(16817608,25146)	exonerate:protein2genome:local	exon	24402	24515	.	-	.	insertions 0 ; deletions 0
CM004426.1:subseq(16817608,25146)	exonerate:protein2genome:local	similarity	24402	25146	403	-	.	alignment_id 1 ; Query SPP00000644_2.0 ; Align 25147 19 144 ; Align 24516 67 114
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis