Command line: [exonerate -m p2g --showtargetgff -q MSRB1a/MSRB1a_x.fa -t MSRB1a/SUBSEQ/CM004415.1_1_subseq.txt --exhaustive]
Hostname: [ws116049u]

C4 Alignment:
------------
         Query: SPP00000645_2.0  Protein  Methionine-R-sufoxide reductase 1a (MSRB1a)  Zebrafish 
        Target: CM004415.1:subseq(12293623,25113) Ictalurus punctatus breed USDA103 chromosome 2, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 459
   Query range: 0 -> 104
  Target range: 18583 -> 25113

     1 : MetSerPheCysSerPheSerGlyGlyGluIleTyrLysAspHisPheGluSer{G}  > :    19
         |||:::||||||||||||...||||||||||||!:!|||||||||!:!||| !!{|}   
         MetAlaPheCysSerPheLysGlyGlyGluIlePheLysAspHisTyrGluPro{G}++ 
 18584 : AtggctttttgttcatttaaaggAGGAGAGATCTTTAAAGATCACTACGAACCG{G}gt. : 18641

    20 : >>> Target Intron 1 >>>>  {ly}MetTyrValCysAlaGlnCysGlyTyrGlu :    29
                 5698 bp           {||}!!:|||||||||!.!:!!||||||||||||
                                 ++{ly}IleTyrValCysValLysCysGlyTyrGlu
 18642 : ........................ag{GT}ATCTATGTTTGTGTAAAGTGTGGCTATGAG : 24366

    30 : LeuPheSerSerArgSerLysTyrGluHisSerSerProTrpProAlaPheThrGluThr :    49
         ||||||||||||! !|||||||||:!!|||||||||||||||||||||||||||  !|||
         LeuPheSerSerThrSerLysTyrLysHisSerSerProTrpProAlaPheThrThrThr
 24367 : CTGTTCTCCAGCACATCAAAGTATAAGcactcctctccctggcctgcCTTCACTACAACT : 24426

    50 : IleHisGluAspSerValSerLysGlnGluGluArgTrpGlyAlaTyrLys  >>>> Ta :    67
         ||||||:!!|||||||||||||||||||||||||||   ||||||   |||         
         IleHisLysAspSerValSerLysGlnGluGluArgProGlyAlaLeuLys++       
 24427 : ATCCACAAGGATAGTGTCTCCAAACAGGAGGAGAGACCTGGTGCACTGAAGgt....... : 24482

    68 : rget Intron 2 >>>>  ValArgCysGlyLysCysGlyAsnGlyLeuGlyHisGluP :    80
            520 bp           :!!|||||||||||||||..!|||||||||||||||||||
                           ++IleArgCysGlyLysCysAsnAsnGlyLeuGlyHisGluP
 24483 : ..................agATTCGCTGTGGGAAGTGCAATAATGGCCTGGGTCATGAGT : 25039

    81 : heValAsnAspGlyProLysHisGlyLeuSerArgPheUnkIlePheSerSerSerLeuL :   100
         ||:!!|||||||||||||||||||||||||||||||||   |||||||||||||||||||
         heLeuAsnAspGlyProLysHisGlyLeuSerArgPhe***IlePheSerSerSerLeuL
 25040 : TTCTGAACGATGGACCCAAGCATGGACTGTCCCGATTCTGAATATTCAGCAGCTCACTCA : 25099

   101 : ysPheIleProLys :   104
         |||||:!!||||||
         ysPheValProLys
 25100 : AGTTTGTCCCTAAA : 25113

vulgar: SPP00000645_2.0 0 104 . CM004415.1:subseq(12293623,25113) 18583 25113 + 459 M 18 54 S 0 1 5 0 2 I 0 5694 3 0 2 S 1 2 M 47 141 5 0 2 I 0 516 3 0 2 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	gene	18584	25113	459	+	.	gene_id 1 ; sequence SPP00000645_2.0 ; gene_orientation +
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	cds	18584	18638	.	+	.	
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	exon	18584	18638	.	+	.	insertions 0 ; deletions 0
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	splice5	18639	18640	.	+	.	intron_id 1 ; splice_site "GT"
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	intron	18639	24336	.	+	.	intron_id 1
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	splice3	24335	24336	.	+	.	intron_id 0 ; splice_site "AG"
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	cds	24337	24479	.	+	.	
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	exon	24337	24479	.	+	.	insertions 0 ; deletions 0
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	splice5	24480	24481	.	+	.	intron_id 2 ; splice_site "GT"
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	intron	24480	24999	.	+	.	intron_id 2
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	splice3	24998	24999	.	+	.	intron_id 1 ; splice_site "AG"
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	cds	25000	25113	.	+	.	
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	exon	25000	25113	.	+	.	insertions 0 ; deletions 0
CM004415.1:subseq(12293623,25113)	exonerate:protein2genome:local	similarity	18584	25113	459	+	.	alignment_id 1 ; Query SPP00000645_2.0 ; Align 18584 1 54 ; Align 24339 20 141 ; Align 25000 67 114
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis