Command line: [exonerate -m p2g --showtargetgff -q gpx8.fa -t genomic.fa]
Hostname: [ws101188u]

C4 Alignment:
------------
         Query: SPP00000620_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Zebrafish 
        Target: CM004418.1:subseq(350000,150000) Ictalurus punctatus breed USDA103 chromosome 5, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 570
   Query range: 0 -> 153
  Target range: 2338 -> 5018

    1 : ArgLysThrLysAspPheTyrSerTyrGluValLysAspAlaArgGlyArgThrValSerLe :   21
        |||!!.  !  !||||||||||||!:!:!!|||||||||.!!!:!||||||!:!||||||||
        ArgAsnHisAlaAspPheTyrSerPheGlnValLysAspThrLysGlyArgSerValSerLe
 2339 : CGCAACCACGCGGATTTTTACTCCTTCCAGGTGAAGGACACGAAAGGGCGGAGCGTCTCTCT : 2399

   22 : uGluLysTyrArgGlyLys  >>>> Target Intron 1 >>>>  ValSerLeuValVa :   32
        |||||||||||||||||||           1778 bp           ||||||||||||||
        uGluLysTyrArgGlyLys++                         ++ValSerLeuValVa
 2400 : GGAGAAATATCGGGGGAAAgt.........................agGTGTCTCTGGTTGT : 4210

   33 : lAsnValAlaSerGlySerGluLeuThrGluGlnSerTyrArgAlaLeuGlnGluLeuHisA :   53
        |||||||||||||  !||||||! !|||||||||!:!||||||! !||||||||||||||||
        lAsnValAlaSerHisSerGluGlnThrGluGlnAsnTyrArgAspLeuGlnGluLeuHisA
 4211 : AAACGTGGCGAGTCACAGTGAACAGACTGAACAGAACTACAGAGACCTGCAGGAGCTGCACC : 4273

   54 : rgGluLeuGlyThrSerHisPheAsnValLeuAlaPheProCysSerGlnTyrGlyAspThr :   73
        ||!  ||||||:!!!!!||||||!.!||||||||||||||||||:!!|||||||||||||||
        rgAlaLeuGlySerThrHisPheThrValLeuAlaPheProCysAlaGlnTyrGlyAspThr
 4274 : GGGCTCTCGGGTCCACTCACTTCACCGTGTTGGCTTTCCCGTGTGCACAGTACGGAGACACA : 4333

   74 : GluSerGlyThrSerArgGluIleGluAlaPheAlaLysSerAsnTyrGlyValThrPhePr :   94
        ||| !!|||! !.!!|||!!:  !||||||||||||!:!|||||||||!.!|||||||||||
        GluProGlyMetGlyArgAspAlaGluAlaPheAlaArgSerAsnTyrAlaValThrPhePr
 4334 : GAACCGGGGATGGGCCGAGATGCAGAGGCCTTTGCCAGGTCCAACTACGCTGTCACTTTCCC : 4396

   95 : oIlePheAsnLysIleLysIleMetGlySerGluAlaGluProAlaPheArgPheLeuThr{ :  115
        |.!!|||!:!! !||||||||||||||||||||||||||||||||||||||||||||||||{
        oPhePheSerMetIleLysIleMetGlySerGluAlaGluProAlaPheArgPheLeuThr{
 4397 : CTTCTTCAGCATGATAAAAATCATGGGATCAGAGGCGGAGCCAGCCTTCAGATTCCTcaca{ : 4459

  116 : G}  >>>> Target Intron 2 >>>>  {ly}ArgLysTrpAsnPheTrpLysPheLeu :  124
        !}            443 bp           { !}! !||||||||||||||||||||||||
        V}++                         +-{al}ProLysTrpAsnPheTrpLysPheLeu
 4460 : g}gt.........................aa{TA}CCAAAGTGGAACTTCTGGAAGTTTCTG : 4929

  125 : ValSerProGluGlyGlnValValArgPheTrpLysProGluGluProValSerAspIleAr :  145
        |||||| !!|||||||||||||||!:! ! |||||||||!!:||||||:!!..!!!:|||||
        ValSerAlaGluGlyGlnValValGlnValTrpLysProAspGluProMetGluGluIleAr
 4930 : GTGAGTGCTGAGGGTCAGGTCGTGCAGGTGTGGAAGCCGGATGAGCCAATGGAGGAAATCAG : 4992

  146 : gLysGluAlaThrThrLeuValArg :  153
        |||||||||||||.!!|||||||||
        gLysGluAlaThrAlaLeuValArg
 4993 : GAAGGAAGCGACGGCTCTCGTACGG : 5018

vulgar: SPP00000620_2.0 0 153 . CM004418.1:subseq(350000,150000) 2338 5018 + 570 M 27 81 5 0 2 I 0 1774 3 0 2 M 87 261 S 0 1 5 0 2 I 0 439 3 0 2 S 1 2 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-28
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	gene	2339	5018	570	+	.	gene_id 1 ; sequence SPP00000620_2.0 ; gene_orientation +
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	cds	2339	2419	.	+	.	
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	exon	2339	2419	.	+	.	insertions 0 ; deletions 0
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	splice5	2420	2421	.	+	.	intron_id 1 ; splice_site "GT"
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	intron	2420	4197	.	+	.	intron_id 1
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	splice3	4196	4197	.	+	.	intron_id 0 ; splice_site "AG"
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	cds	4198	4459	.	+	.	
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	exon	4198	4459	.	+	.	insertions 0 ; deletions 0
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	splice5	4460	4461	.	+	.	intron_id 2 ; splice_site "gt"
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	intron	4460	4902	.	+	.	intron_id 2
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	splice3	4901	4902	.	+	.	intron_id 1 ; splice_site "AA"
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	cds	4903	5018	.	+	.	
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	exon	4903	5018	.	+	.	insertions 0 ; deletions 0
CM004418.1:subseq(350000,150000)	exonerate:protein2genome:local	similarity	2339	5018	570	+	.	alignment_id 1 ; Query SPP00000620_2.0 ; Align 2339 1 81 ; Align 4198 28 261 ; Align 4905 116 114
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis